Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0540 ATGGATCGATCATTATGAAGCATACACCGCCGAGCTCAACCCCGCCCTTTCACTCACTTGACATTGCAGGCAGGTAGAAAGACTGAGATGGAGCAGCCCGAAGAGCATGAAGTATACGGAGGAGACATCCCCGACGAGGGGGAGATGGACGCAGATTTCGTTGAAGAAGAAGGAGAAGAAGACAACGATGGCCCCAATCACTCAAACAAGGACTTAGAGGACATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTAACGCGCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGAGTCGGTCAAGATTCAGCTGGTTCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCCCGGTCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACGATATTGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAGATTGATGCTGTTCAAAATGCTATCCTGTTGAATGAATCAGAATTGCATGGTCGACAATTAAAGGTCTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATCGTGGAAGAAGACCTATGGGTTTCCGACCTGGAATGCCTTTCATGCCTTCTCCATTCTATCCTCCATATGGTTATGGGAGGGTTCCAAGGTATAGGCGCCCCACACGGTACAGGCCGTACTAG 741 0.4683 MDRSLXSIHRRAQPRPFTHLTLQAGRKTEMEQPEEHEVYGGDIPDEGEMDADFVEEEGEEDNDGPNHSNKDLEDMKKRLKEIEEEANALREMQAKVEKEMGVGQDSAGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAILLNESELHGRQLKVSAKRTNVPGMKQYRGRRPMGFRPGMPFMPSPFYPPYGYGRVPRYRRPTRYRPY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0540 246 MobiDBLite consensus disorder prediction 44 62 - -
Glsi12g0540 246 SMART rrm1_1 123 194 IPR000504 GO:0003723
Glsi12g0540 246 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 231 - -
Glsi12g0540 246 Coils Coil 69 99 - -
Glsi12g0540 246 SUPERFAMILY RNA-binding domain, RBD 112 221 IPR035979 GO:0003676
Glsi12g0540 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Glsi12g0540 246 MobiDBLite consensus disorder prediction 28 43 - -
Glsi12g0540 246 FunFam Polyadenylate-binding protein 1 116 202 - -
Glsi12g0540 246 CDD RRM_II_PABPs 123 194 - -
Glsi12g0540 246 MobiDBLite consensus disorder prediction 63 94 - -
Glsi12g0540 246 Gene3D - 60 195 IPR012677 -
Glsi12g0540 246 MobiDBLite consensus disorder prediction 1 94 - -
Glsi12g0540 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 198 IPR000504 GO:0003723
Glsi12g0540 246 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0540 Glsi-ChrGlsi12 19929011 19937841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0540 123 194 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 9.52e-10 56.6