Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0539 ATGGAGCAGGAAGAGCAGCAGCAACAGCACGAAGAGCATGAAGTGTACGGAGGAGACATTCCCGACGAGGGGGAGATGGACGCAGATTTGGAGATGTCTTCTTTTAGGGCTGAAGAAGAAGAAGGAGATGACCCCAATGGCCCCAATCAACCAAACAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATCGAGGAAGAAGCTGGCGCCCTTCGCGAAATGCAGGCTAAGGTGGAGAAAGAGATGGGTGCTGTTCAAGATTCATCCGGTTCTTCTGCAAGTCAAGCTGAGAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATTCATGTACGCCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTAAACAGAGTGACGATATTGACAGACAAGTTTGGCCAGCCAAAAGGATTTGCTTATGTTGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTGAATGAATCAGAATTGCATGGTCGACAATTGAAGGTCTCTGCTAAGCGTACAAATGTACCTGGAATGAAACAATTTCGTGGAAGAAGACCTATGGGTTTACGATCTAGAAGGCCCTTCATGCCTACTCCATTCTATCCTCCATATGGTTATGGAAGGGTTCCGAGGTTTAGGCGACCCACACGATACAGGCCATACTAG 690 0.4681 MEQEEQQQQHEEHEVYGGDIPDEGEMDADLEMSSFRAEEEEGDDPNGPNQPNKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDSRSIYVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPMGLRSRRPFMPTPFYPPYGYGRVPRFRRPTRYRPY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0539 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 28 203 - -
Glsi12g0539 229 CDD RRM_II_PABPs 106 177 - -
Glsi12g0539 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Glsi12g0539 229 SMART rrm1_1 106 177 IPR000504 GO:0003723
Glsi12g0539 229 MobiDBLite consensus disorder prediction 29 47 - -
Glsi12g0539 229 Coils Coil 55 82 - -
Glsi12g0539 229 MobiDBLite consensus disorder prediction 6 20 - -
Glsi12g0539 229 MobiDBLite consensus disorder prediction 53 81 - -
Glsi12g0539 229 SUPERFAMILY RNA-binding domain, RBD 95 203 IPR035979 GO:0003676
Glsi12g0539 229 FunFam Polyadenylate-binding protein 1 99 185 - -
Glsi12g0539 229 Gene3D - 46 178 IPR012677 -
Glsi12g0539 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 181 IPR000504 GO:0003723
Glsi12g0539 229 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0539 Glsi-ChrGlsi12 19904089 19920219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0539 106 177 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 1.38e-09 55.8