Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0533 ATGCCGGATATGACGGTCAACAGCAGCAACAACAACAACAACGTTGGTCAGTTTGGCGATACGACGCTGACCAAAGTATTTGTCGGAGGACTAGCGTGGGAGACTCCGAAAGAGGCCATGAGGGAGCACTTTCAGAAGTACGGCGAGATCCTTGAGGCCGTCATTATCTCTGATAAGGCCACCGGCAGATCCAAAGGCTATGGCTTCGTGACGTTCAAGGAAGCTGAGGCGGCGAAGAAGGCTTGCGAGGATCCTACACCGATCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTGGGCGCGCGCCGCCCGAGGTCCACCAACGCTTCGCCTCCTCGACAACAAGGATCCAACGGTGGAGGACCAAGGAACGCCTCCAGCACGCCGCCACCACCCCCACCGGCCAATCACGTTCGGTGGTATTACCCGATGGGGACGTCTCCTTCCGCTTTCCATCAGCACCACCATCACCCTCTTCCTCTATACGGGTACAGCCCCACCTACATTGCAACTGACATGAATTACAATCAGAAGTTATCATATACGGGCGGTGGGGCCTACATGAACGGCGGTTACTTCCCTCCGCTGTACCCGAGCCAGGCAATGGTGGGAGGGAACACGGCGATGCCCATGTACCCTTTTTACCAGTATCATCAAACGCACACGATGGGGCTACCAGCCCACATGTTTCAACCAACCACACCGGGGCACGTGGCCATCGTGTCTAAGTCCGCGTCCATCACTCCCAACGCAGGTGCGTCACATGGTAACATGCCCCACCATGCACAGTCAATGTATATCTGGAAGCATTTGAAACAACATGCATGA 834 0.5588 MPDMTVNSSNNNNNVGQFGDTTLTKVFVGGLAWETPKEAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRSTNASPPRQQGSNGGGPRNASSTPPPPPPANHVRWYYPMGTSPSAFHQHHHHPLPLYGYSPTYIATDMNYNQKLSYTGGGAYMNGGYFPPLYPSQAMVGGNTAMPMYPFYQYHQTHTMGLPAHMFQPTTPGHVAIVSKSASITPNAGASHGNMPHHAQSMYIWKHLKQHA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0533 277 SMART rrm1_1 25 97 IPR000504 GO:0003723
Glsi12g0533 277 FunFam Putative RNA-binding protein ARP1 18 107 - -
Glsi12g0533 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Glsi12g0533 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Glsi12g0533 277 MobiDBLite consensus disorder prediction 103 126 - -
Glsi12g0533 277 CDD RRM_RBM24_RBM38_like 24 99 - -
Glsi12g0533 277 PANTHER BOULE-RELATED 8 254 - -
Glsi12g0533 277 Gene3D - 19 130 IPR012677 -
Glsi12g0533 277 MobiDBLite consensus disorder prediction 103 141 - -
Glsi12g0533 277 SUPERFAMILY RNA-binding domain, RBD 20 126 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0533 Glsi-ChrGlsi12 19773629 19775913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0533 20 100 C2H2 Transcription Factor Family AT2G19380 43.210 1.36e-16 77.8