Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0527 ATGGCTATGTTGGATCTCAATGTCGATATTGTCTCTGCTGATTCGACTAATGCTCAAAAGGATGTCACAATGGAGGTGGAAAAGCCCCCAGAAAATTTTCAGACCCAAATGGAATATTCCGGGACTTCCAATTCGTCTGTGGTTAATTTGGAAGAAGCCCAAAACAACAACACTGGAGACGTGGTTTCCTCAAATAATTCGTCTGCTTTCATTTTTGACATATTGAAGAAAGAAACACATAGCGCAGATGCCACTAATGGGGTTAAGGAAGTGAACACAACACCAGAAATTGGCGCGAGGACCCTTTTCCCTGTCACTGGAGACAAAGGAGGAAGAGAGTATGATTTCACGTTGGGGTTATCCTCGAGAAATCAATGGCTGAACCTATCCTCCACTGAGCCTGGTGGGCAAGCTGAGTTGAGAATCTTGCGGCAGAAGCAACCCCAAGTCCGGAAAAGTAGGCGAGGACCCAGGTCTCGCAGCTCACAGTACCGGGGCGTTACCTTCTACCGCAGGACCGGTCGATGGGAGTCACACATATGGGATAGTGGGAAGCAGGTCTACTTAGGTGGATTTGACACTGCACATGTTGCTGCAAGAGCATACGATCGGGCTGCAATTAAGTTCCGGGGACTTGATGCTGATATAAACTTTAGTTTGAGTGATTATGAGGAGGACTTGAAGCAGATGAGAAGTTTGAGTAAAGAGGAGTTTGTCCACGCACTTCGTCGCCAATGCTCTAATATACCAAGGGGGAGTTCAAAGTATAAAGGTGTATCTCTGCACAACTGGGGTCAATGGGAAGCACGAATGAGCCCATTCCTTGGCAAAAAGTTTTATGACAAGCCACCCATCAAGTGTGATGAAAGAGATGTGGTGACCAGCTTTGAGCCCAGTACCTGTAAGGGAGAAACAACCGTTGAGACCAGCAGAGGAGGTAGTTGTCATAATCTTGATTTGAGCCTTGGTATTGCTCCACCTTCTCATAAATCCAAGAACAATGATCCTGGGGGAGACTTTTCTTGCCCTTATACAGCTTGTGAGATGTCTAACATAGGGGGCCCAATGGCTCATAGCTCTGGTCCTGCATTATTCAGAGGACAAGCCATTTATGGTGCAGCAATGACTTCTAAACATGATCAGATCTGCTCTGGCATATATCCTGGTTATATACAGAACTATGAGGAGAAGGCTGTCGGAAAGAGAATGGAATCTGTTTCTTTGCCAAGATTCTCCAACTTGGCTTGGCAACTTCACGGCAACGGCAGCATTGCGGCAGTGCCAGTGCTTCCAAGTGCAGCATCATCAGGATTCGTCTCACAACCATCATGA 1332 0.4662 MAMLDLNVDIVSADSTNAQKDVTMEVEKPPENFQTQMEYSGTSNSSVVNLEEAQNNNTGDVVSSNNSSAFIFDILKKETHSADATNGVKEVNTTPEIGARTLFPVTGDKGGREYDFTLGLSSRNQWLNLSSTEPGGQAELRILRQKQPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHVAARAYDRAAIKFRGLDADINFSLSDYEEDLKQMRSLSKEEFVHALRRQCSNIPRGSSKYKGVSLHNWGQWEARMSPFLGKKFYDKPPIKCDERDVVTSFEPSTCKGETTVETSRGGSCHNLDLSLGIAPPSHKSKNNDPGGDFSCPYTACEMSNIGGPMAHSSGPALFRGQAIYGAAMTSKHDQICSGIYPGYIQNYEEKAVGKRMESVSLPRFSNLAWQLHGNGSIAAVPVLPSAASSGFVSQPS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0527 443 FunFam AP2-like ethylene-responsive transcription factor 162 221 - -
Glsi12g0527 443 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Glsi12g0527 443 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 330 - -
Glsi12g0527 443 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Glsi12g0527 443 CDD AP2 163 218 IPR001471 GO:0003700|GO:0006355
Glsi12g0527 443 SMART rav1_2 163 225 IPR001471 GO:0003700|GO:0006355
Glsi12g0527 443 Gene3D AP2/ERF domain 162 221 IPR036955 GO:0003700|GO:0006355
Glsi12g0527 443 ProSiteProfiles AP2/ERF domain profile. 163 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0527 Glsi-ChrGlsi12 19610553 19613695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0527 3 278 AP2-EREBP Transcription Factor Family AT2G28550 53.737 2.46e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g0527 AP2 2.9e-10 CL0081