Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0519 ATGAACAGCGCTTCGAATTCTGATCAGAACCCTTCACAAGACTCAACAGAATATGTATATTATTCCTTCGGATTAACCATTGCCATTCTCATGGTGCTCGCATTCATCACCCTCACTCTATGGTATTGCGGCCGGAGAAATTCCCACAACGACACAGAATCTGGCCAAGGTAGCAGTAGCAGAACCACCAGAAACTTCCACTTGCGCACGATCATGGTGGGAGATTCTTCGTCCAGAAGGCAAATTGGTGTTGATGAAGCGACCTTGAAGAGCTATCCAGTGCTATTGTACTCTGAAGCTAAGCTTGCTGGTGGTGGTGGTGGAGACACACATACAGCGACGTGCTCTGTATGCTTGGGAGATTACAAGGACACTGAGTGGTTGCGACTATTGCCAGATTGTGGTCACTTTTTTCATCAAAAGTGTATTGATCTGTGGTTGAGGATGAGCCCTTCTTGTCCCTTGTGCCGAACCTCGCCGCTGCCATCGCCGGTTTCAACTCCGCTTGCCGAAGTTGCTCCTTTGGCAAGAATAAGGAGTTGA 543 0.4825 MNSASNSDQNPSQDSTEYVYYSFGLTIAILMVLAFITLTLWYCGRRNSHNDTESGQGSSSRTTRNFHLRTIMVGDSSSRRQIGVDEATLKSYPVLLYSEAKLAGGGGGDTHTATCSVCLGDYKDTEWLRLLPDCGHFFHQKCIDLWLRMSPSCPLCRTSPLPSPVSTPLAEVAPLARIRS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0519 180 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Glsi12g0519 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Glsi12g0519 180 Pfam Ring finger domain 114 157 IPR001841 -
Glsi12g0519 180 CDD RING-H2_EL5-like 115 157 - -
Glsi12g0519 180 SMART ring_2 115 156 IPR001841 -
Glsi12g0519 180 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 171 IPR045899 -
Glsi12g0519 180 SUPERFAMILY RING/U-box 88 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0519 Glsi-ChrGlsi12 19275892 19276434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0519 21 176 C3H Transcription Factor Family AT2G35910 48.077 5.64e-40 133