Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0517 ATGGGTTCTGTTTGTGGTTGTTTGAGTATTGACGATTTTGAAGATTATCTAAATCCTAATAGTTCTGTATATAGGAATTGCATGTGTCTTAGTTGCTTCTTGCAGAACGTTTTGAATGTGTATACATCAATTTTCCGTAGGCGCGAAGTGCATTCCCTTCCTTCATCTATACAGGGGGCAGCGTCTATAACTTCTACAGCATCACTGGATAATTCTCTGTCTGACATATATCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCGGACCCTAGGTATTTCCTCTCTCAACGTGATGGACTAGTTTCAAGACGTGAGAAAGGTTCAAGTCATTCCAATGAGGAATCTCAACCTCTAAGAAGTGATCTCGATGTGGATTCAGAATCTTTAAATATGGTTGACAAAAGGAATGAATGTGCTCGTGAAAATGGATCAAAGGAATACTGTTATAAGTCTTCACTAAGACTAGCATCAGCAAAATATTCAACTGGAGTTGGGCTGGTCTATGCATCATCAGAAGAAGAGGATGTTTGTCCAACTTGTCTTGAAGAATATACTCAAGAAAACCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTCTGTGGGAAGGTAATTTTTCTCTTGGTATTTTTTTCTGAATTCTTTCTTACCAAAACCAAAATCCATATAAATTAA 723 0.3831 MGSVCGCLSIDDFEDYLNPNSSVYRNCMCLSCFLQNVLNVYTSIFRRREVHSLPSSIQGAASITSTASLDNSLSDIYRSPPRPLPYDADPRYFLSQRDGLVSRREKGSSHSNEESQPLRSDLDVDSESLNMVDKRNECARENGSKEYCYKSSLRLASAKYSTGVGLVYASSEEEDVCPTCLEEYTQENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKVIFLLVFFSEFFLTKTKIHIN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0517 240 CDD RING-H2_AIRP1-like 173 221 - -
Glsi12g0517 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 222 IPR013083 -
Glsi12g0517 240 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 222 - -
Glsi12g0517 240 SMART ring_2 177 217 IPR001841 -
Glsi12g0517 240 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Glsi12g0517 240 SUPERFAMILY RING/U-box 172 224 - -
Glsi12g0517 240 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 223 - -
Glsi12g0517 240 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Glsi12g0517 240 MobiDBLite consensus disorder prediction 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0517 Glsi-ChrGlsi12 19204023 19206035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0517 1 221 C3H Transcription Factor Family AT5G15790 58.850 8.22e-91 265