Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0510 ATGGGGAGAGGTAGGGTTCAGCTGAGGCGAATCGAGAACAAAATCAGCCGCCAAGTGACATTTTCTAAGCGGCGAACGGGACTGTTCAAGAAAGCAAATGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTCTAATTATCTTCTCCACCAAAGGGAAGCTCTTTGAGTACTCCTCTGATCTCAGCTTGGATGGCATCTTGGAACGATATGAGAGACATGCGAATACAGACCAACTTGCTCAAGTTAACAATGAATCACAGGGAAACTTGTCCTTGGAATACTTCAAGCTTACCACTAGAGTTGAAGTCTTGGAGAAGAACATAAGGAATTATGCAGGACATGATCTGGATAAACTGAGTTTGAAAGAGCTTCAGAATTTAGAGCAACCGATTGAAACAGCTCTAAAACGCATTCGAACAAGAAAGAACCAACTTATGAACGAATCCATCTCAGAGCTGCAAAAAAGGGCAAGGGCATTGGAGGAGCAAAACAACAAGCTAGCTAAGAAGGTGAACGAGAAAGAGAAGACACTGGCTGAAAATCCACAACAAGGGCTGGAGGAATCCCTAGGGAAAAATTTATCCAGCTTTGACTTACCTGCACCTCAACTACAAGAACCACAAGTTCCAGTTCCATCTCTTACTCTCGGTGGAATGCAAGCAAGAGGATCACAGGAAGAACGAGTTGAAGCCCAGACAGCCCCAAATAGCACCACTATCATGCCGCCATGGATGCTGCGTCATTTGATTAGATAG 756 0.4431 MGRGRVQLRRIENKISRQVTFSKRRTGLFKKANEISVLCDAQVALIIFSTKGKLFEYSSDLSLDGILERYERHANTDQLAQVNNESQGNLSLEYFKLTTRVEVLEKNIRNYAGHDLDKLSLKELQNLEQPIETALKRIRTRKNQLMNESISELQKRARALEEQNNKLAKKVNEKEKTLAENPQQGLEESLGKNLSSFDLPAPQLQEPQVPVPSLTLGGMQARGSQEERVEAQTAPNSTTIMPPWMLRHLIR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0510 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Glsi12g0510 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Glsi12g0510 251 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi12g0510 251 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Glsi12g0510 251 Coils Coil 143 180 - -
Glsi12g0510 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 MobiDBLite consensus disorder prediction 168 187 - -
Glsi12g0510 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Glsi12g0510 251 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Glsi12g0510 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi12g0510 251 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0510 Glsi-ChrGlsi12 18525679 18552693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0510 1 219 MADS-box Gene Family AT1G26310 52.381 1.32e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi12g0510 K-box 1e-23 No_clan