Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0462 ATGATCAAACCACGAAAAACCACACCCATTTTCCTCTTATTCTTCTTCCTTCAAATGCTCTTCACAATCCTTGTTAAGTCCTACACTCCTACTGAAGATTTCGCAATCAATTGTGGCTCCTCCGGCGACTCATCTACCACAGACGATCGGAACTGGACCGGCGATGTTGGCTCGAAATTCTTTTCTCCCATTGAACCAAAAACCGGAGACGCCTCCGCCGCAGCCGTGGCTCCGGTCAGCAAAACAATCCCCTACGCCTCCGCGCGCGTCTCTCGCTCCGAATTCACATACTCATTTCCGGTCACCGACGGCCAAAAGTTCATTCGCCTCCATTTTTACCCATTTTCATACCTAGATTTCGACCGCTCGAACTCCCTCTTCTCCGTCAAAGCAGGACCACACACCCTTCTTAAGCACTTCAACGCTTCACTCACTGCCAACAACGATGAAGACCTTTCGGAAGACATTATAGTCAAAGAGTACTGCGTCAACATTGCACCTGGCCAGAGGCTAAACATAACCTTCACGCCTGGCCCCTTTCATCCAAACGCCTATGCCTTCATTAACGGGATCGAGGTGGTGTCTATGCCTACGAATCTTTACTACAATCCAGACGACTACACGAACCCAGGGATACAGCTAAACGGGGGAAACGAACTGTTGTGGGTCGAAAACAGTAGTTCTCTTGAGACAGCATACAGAATCAACGTTGGAGGAAGCCAAATCTCTCCCGACAAAGACACCGGCATGTTTCGTTACTGGGACGAGGATACTCGTTACTTGGAGATGCAGCACCCACATAGCGTATCAGCAGGGTTTGGTCTTAAACCAATTTACAAAGATGGTCAGAATAATAATTTCACAGCACCGGATGAAGTATACTTAACTGCACGATCGTACGGGATGAACGAGACCTCGAAATATAACGTGACCTGGGAGTTTGAGGTGGACTCAGAGTTTATTTACATGGTCAGATTGCATTTTTGTGAGTTTAATCAAGCGATCCAGAAAGTTGGAGATAGAGTTTTTCAGATCTTCATAGCTGATACTTTGGTTGTGCCTTATGCTGATCTGATCATGTGGAGTGGAGGTAATCTAATTCCTGTTCATAAGGACTACGCTGTATCGATGTTAAACACAGGAAGTTTGAAGATGAAGAAACTCAATCTTTCCATCAAGTTGCGACCACACCCAAATCCAAAAGTTAGCAGCTATAATGATGTGACATTGAATGGTATCGAAGTTTTGAAAATTAGTGACGGCAACGACAACCTCGGAGGTTTCAATCCCGACCCACATCTATCTCCCTCCCCGCCATTGCTGCCATTGACGAAGACATCAAAAAAATCGAAGAAAACCACGGTAATTCCCATTGTTGTAGGTGTAGCTTCAGGCTTCCTTGTGCTATCTCTTGTCGTTTTGTTCATTTTCCGGCGATTGACTAAAACTCCGGTCAACGACGGAAAATCATGGTGGTGGGGACAAAAATCTACAGCCACGTCAACCAAAACAAACAAGACCCATGTTTCATCATTGCCGTCCAATTTGTGTCGACGCTTTTCAATCGCTGAGATCAGAGCAGCCACAAACAACTTCGATGATATTTTCATAGTGGGCGTTGGAGGGTTTGGTAATGTGTATAAAGGTTACATTGATGACGATACGGTTCCCGCCGCAATCAAACGGCTCAAACCGGGTTCGCAACAAGGAGCCCACGAGTTCCTGACCGAGATTGAAACGCTCTCTCAACTTCGCCATCTTCACTTGGTTTCTCTCATCGGTTATTGCTACGATTCCAGCGAGATGATCCTCGTGTATGAGTTTATGGCACGTGGGACCCTTCGTGACCATCTGTTCGAATCAGACAACGAACCACTCTCTTGGAAACAAAGACTAGAGATTTGCCTTGGTGCAGCGAGAGGACTGCATTATCTTCATACAGGTGCGAAGCACCATATCATTCACCGCGACGTGAAGACGACGAACATTTTAATAGACGAGAAATGGATGGCGAAAGTTTCGGATTTCGGACTATCCAAAATAGGACCCACGGGGATGTCAAGATCTCACATAAGCACAGTAGTAAAAGGAAGCGTCGGGTATTTGGATCCGGAATACTACAAGCGTCAACGATTGACTCAGAAGTCTGACGTGTACTCGTTCGGCGTGGTGCTGCTTGAGGTATTGTGTGGGAGACCACCTATCCTACGTATGCCAGAGAAGCAGAAAGCAAGCTTAGTAGAGTGGGTCCGGAGATGCCATCAAAAGGGTGAGCTTGATCAAACGGTTGATATATTCTTGAAGGACAGCATCAGGCCAGAGTGCTTAAAAGCTTTCGGTGATATGGCATTAAGTTGTTTGTTAGATGATGGGAATCAACGGCCATCGATGGGTGATGTGGTGTGGAGCCTAGAGTTTGCGTTGGAGCTGCAAGAGAGCACAGAGAAAAGAGGGCTTGATGGGATCATTAAGGAAGAGAGAGTACTATTGAGAAAAGGGAAGAATGAGGAAGAAGAAAGTGAAGTGCGATTTACGAGTAGTGAAGGAACTGGGAGTGAATCGAAGAGCAGCAAGATGACTCTTTCTAGTAGTGAAGAGCAAGCTTTGGTTTCTGAGATGGTCTTCTCGGAGCTCAGGGACCCAACGGTACGATGA 2655 0.464 MIKPRKTTPIFLLFFFLQMLFTILVKSYTPTEDFAINCGSSGDSSTTDDRNWTGDVGSKFFSPIEPKTGDASAAAVAPVSKTIPYASARVSRSEFTYSFPVTDGQKFIRLHFYPFSYLDFDRSNSLFSVKAGPHTLLKHFNASLTANNDEDLSEDIIVKEYCVNIAPGQRLNITFTPGPFHPNAYAFINGIEVVSMPTNLYYNPDDYTNPGIQLNGGNELLWVENSSSLETAYRINVGGSQISPDKDTGMFRYWDEDTRYLEMQHPHSVSAGFGLKPIYKDGQNNNFTAPDEVYLTARSYGMNETSKYNVTWEFEVDSEFIYMVRLHFCEFNQAIQKVGDRVFQIFIADTLVVPYADLIMWSGGNLIPVHKDYAVSMLNTGSLKMKKLNLSIKLRPHPNPKVSSYNDVTLNGIEVLKISDGNDNLGGFNPDPHLSPSPPLLPLTKTSKKSKKTTVIPIVVGVASGFLVLSLVVLFIFRRLTKTPVNDGKSWWWGQKSTATSTKTNKTHVSSLPSNLCRRFSIAEIRAATNNFDDIFIVGVGGFGNVYKGYIDDDTVPAAIKRLKPGSQQGAHEFLTEIETLSQLRHLHLVSLIGYCYDSSEMILVYEFMARGTLRDHLFESDNEPLSWKQRLEICLGAARGLHYLHTGAKHHIIHRDVKTTNILIDEKWMAKVSDFGLSKIGPTGMSRSHISTVVKGSVGYLDPEYYKRQRLTQKSDVYSFGVVLLEVLCGRPPILRMPEKQKASLVEWVRRCHQKGELDQTVDIFLKDSIRPECLKAFGDMALSCLLDDGNQRPSMGDVVWSLEFALELQESTEKRGLDGIIKEERVLLRKGKNEEEESEVRFTSSEGTGSESKSSKMTLSSSEEQALVSEMVFSELRDPTVR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0462 884 SMART serkin_6 532 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0462 884 FunFam FERONIA receptor-like kinase 33 197 - -
Glsi12g0462 884 CDD STKc_IRAK 538 805 - -
Glsi12g0462 884 Pfam Protein tyrosine and serine/threonine kinase 538 770 IPR001245 GO:0004672|GO:0006468
Glsi12g0462 884 Pfam Malectin-like domain 36 417 IPR024788 -
Glsi12g0462 884 Gene3D Transferase(Phosphotransferase) domain 1 609 825 - -
Glsi12g0462 884 ProSiteProfiles Protein kinase domain profile. 532 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0462 884 Gene3D - 228 419 - -
Glsi12g0462 884 Gene3D - 33 197 - -
Glsi12g0462 884 FunFam Receptor-like protein kinase FERONIA 504 608 - -
Glsi12g0462 884 FunFam FERONIA receptor-like kinase 227 419 - -
Glsi12g0462 884 ProSitePatterns Protein kinases ATP-binding region signature. 538 561 IPR017441 GO:0005524
Glsi12g0462 884 PANTHER OS03G0124300 PROTEIN-RELATED 11 494 IPR046957 GO:0004672
Glsi12g0462 884 MobiDBLite consensus disorder prediction 845 866 - -
Glsi12g0462 884 FunFam Receptor-like protein kinase FERONIA 609 824 - -
Glsi12g0462 884 SUPERFAMILY Protein kinase-like (PK-like) 506 807 IPR011009 -
Glsi12g0462 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Glsi12g0462 884 MobiDBLite consensus disorder prediction 833 866 - -
Glsi12g0462 884 Gene3D Phosphorylase Kinase; domain 1 493 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0462 Glsi-ChrGlsi12 15903847 15906501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0462 23 884 Receptor kinase-like Gene Family AT3G51550 47.699 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Glsi12g0462 Malectin_like 9.1e-40 CL0202