Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0422 ATGTTTTTGTCTTTTTCTTCTACTTCAGTGATCAAATGGCGTTTTTATCACAAACCCATGTCCTCTATGCTTTTTGTGGGACTCTACTTCCTCTTATGGGTTCGTTCTATGCCCCTGAGTGATGCCGTTGTGGCCGATTCAGACAAATCGGTGCTTCTTCAGTTCAAGAGTTCAGTATCCGACCCATCGGGGCTGCTTTCGAGCTGGAAGTTGACCAATGATTCCAATCACTGTTCTTGGTTCGGTGTCTCCTGCGACTCCAGTTCACGGGTCGTCTCACTCAACATTACTGGAAATGGCGGCGGTGGAGGTAATAAAAGTTATTTTTCGTGTTCCAATTTTGATGAATTCCCGCTGTATGGGTTTGGGATTAGGAGGAGCTGTGAGGGTAGTAGAGGAGCATTGTTTGGAAAGTTGCCTCCTCTGGTCATTAAGCTTACCGAGCTCAAGGTTTTGTCGCTTCCGTTCAACGGTTTTGATGGTGAAATTCCTGGTGACATCTGGGGTATGGACAAACTAGAGGTTCTCGATCTAGAGGGTAACTCGATAACTGGGCCCCTTCCTTTTCATTTCGATGGTTTGAGGAATTTGCGGGTTCTTAATCTTGGGTTCAATAGAATTGTTGGGGAGATACCAAACTCATTTTCGCGTCTTGCAAGTTTGGAAATTTTGAATTTAGCTGCGAATGGATTAAATGGGTCGGTTCCAAGTTTCATTGGTAAGCTGAAAGGGGCATATCTATGGTTTAATCTGCTTGGTGGGCCCATCCCACAGGAGATCGGTGAGAATTGTGAGAAGCTTGAGCATCTGGATTTGTCAGGTAATTTCTTAATTCATGGAATTCCTAGCAGTTTAGGAAATTGTAGTCAATTACGGACACTTTTGCTGTATTCAAATTCCTTGGAGGAGGTTATTCCGGCTGAACTTGGTTATCTTCAGAAGCTTGAGGTGTTGGATGTTTCAAGGAATAGTCTCGGTGGATCAATACCTTCTAGGCTTGGTAATTGTTCAGAGTTGTCCGTTCTTGTGCTATCAAATCTTTTCAATCCACTCCCACTAGTCAACAGGACGGGAAGGGACTCTTCACTGGAGGAAATTATTTCTATAAATGATGAATTGAATTATTTTGACGGTGCAATTTCAGCGGAAATTACAACCCTTCCGAAGCTGAGCATATTATGGGCACCTAGGGTAACTCTTGAAGGAAGTTTTCCAAGCAGTTGGGGCACTTGTGATAATTTAGAGATGGTCAATTTGGCTCAGAATTATTTCACTGGAACGTTCCCAAATCAGCTCAGTCGCTGCAAGAAGCTGCATTTTCTTGATTTAAGCTCAAACAACCTTACTGGGGAGCTTGCTAAAGAACTTCCTGTTGCCTGTATGACTGTGTTTGATGTCAGTGGGAACATTTTATCTGGTTCAATTCCTGACTTCTCTTATAACACTTGTCCTGCAGTTCCTTCCTGGAATGGTAATCCATTTGCATCTGACAGCCCTTACCCTCCATATGTATACTTCTTTTCATCGAAGTTTCATAATGGAACCCTTTTGCCATTAGTGGGAGAAGTAGGTCTTACAGTTTTTCACAACTTTGGGAACAACAACTTTACTGGCATGCAGTCATTGCCAATCGCACATGACATACTGGGGAAGCAAGCTGTTTACACATTTCTTGTTGGAGAAAACAAGCTTACAGGACCATTTCCTAGTAGCTTATTTGAGAAATGTGATGGATTAAATGCTTTTCTTTTAAATATCAGTTATAATCAGTTATCTGATCAAATTCCTGCCAGATTTGGTGGAATGTGCAGATCATTAAAATTATTTGATGTGTCTGGAAATCAGATTGTAGGACCAATACCGCCTAGTTTAGGGGACTTGGTATCTCTTGTTGCTCTGAACCTCAGTTGGAATCAATTAGAAGGTCAGATTCCCACCAACCTTGGCCAGATGAAGGATCTGAAGTTTCTCTCTTTGGCTGATAATAACTTAACTGGCTCCATTCCTACCAGCCTGGGGCAATTGTACTCTTTAGAAGTCTTGGATCTTTCTTCAAACTCCCTTACTGGTGAAATTCCAAAGGGTATGGAGAACTTGAGAAATCTGACTGATCTTCTGCTCAATAGCAACAAACTTTCTGGAGAGATTCCTACTGGTTTGTCAAATATCACTTCGCTTACAATGTTCAACGTATCCTTCAATAACTTGTCTGGATCCTTGCCATCAAATAGTAATTTCATGAAATGCAGCACTGCTATTGGGAATCCATTTCTACGTTCTTGTCATATGTATAGTCTGACTGTGCCATCAGCAGATCAACAAGGGAGAGCTGCTGATTCTTATTCTTCCTTTGCTACACCACCAGAAGCTACTAGTGAAAGGGGTGGGAATGGTTTCAATTCAATTGAAATAGCATCCATAACTTCTGCATCAGCCATTGTGTCTGTTCTTCTGGCCCTAATTGTTCTATTCTTTTATACCCGGAAGTGGAAACCCAAATCCAGGGTTTCTGGGTCTACGAGAAAAGAAGTTACAGTTTTCAATGATATTGGTGTCCCTTTGACATATGAAAATGTTGTTCATGCCACAGGAAATTTTAATGTAAGCAACTGGATTGGAAATGGAGGATTTGGGGCAACCTATAAGGCGGAGATATCACCAGGGAACTTAGTGGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACATTTCCATGCAGAGATCGAGACCCTTGGCAGGCTTCGTCATCCGAATCTTGTCACTTTGATTGGTTATAATGCTAGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCGGGCGGTAATCTGGAAAAATTCATCCAGGAGAGGTCAACAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCAATGGACATAGCCCGTGCACTTGCCTACCTACATGATCAGTGTGTACCCCGTGTCCTCCATCGTGATGTCAAGCCCAGCAATATCCTGTTGGATGATGATTTTAATGCTTATCTATCTGACTTTGGATTGGCCAGACTTCTGGGAACTTCAGAAACCCATGCTACCACTGGTGTAGCTGGAACATTTGGTTATGTTGCTCCTGAATATGCCATGACTTGCCGTGTTTCTGATAAGGCCGATGTGTATAGTTATGGTGTGGTGCTTCTAGAGTTGCTTTCAGACAAGAAGGCACTAGATCCTTCATTTTCTTGCTTTGGAAATGGTTTCAACATAGTAGCATGGGCTTGCATGCTACTTCGGCAAGGTCGGGCCAAGGAGTTTTTCACTACCGGGTTATGGGATTCAGGACCTGAAGATGATTTGGTGGAAGTCTTACACTTGGCAGTTGTGTGTACTGTGGATTCCCTTTCTACCAGACCTTCAATGAGACAGGTTGTAAGACGGCTAAAGCAGCTTCAACCACCATCGTGCTAG 3438 0.4264 MFLSFSSTSVIKWRFYHKPMSSMLFVGLYFLLWVRSMPLSDAVVADSDKSVLLQFKSSVSDPSGLLSSWKLTNDSNHCSWFGVSCDSSSRVVSLNITGNGGGGGNKSYFSCSNFDEFPLYGFGIRRSCEGSRGALFGKLPPLVIKLTELKVLSLPFNGFDGEIPGDIWGMDKLEVLDLEGNSITGPLPFHFDGLRNLRVLNLGFNRIVGEIPNSFSRLASLEILNLAANGLNGSVPSFIGKLKGAYLWFNLLGGPIPQEIGENCEKLEHLDLSGNFLIHGIPSSLGNCSQLRTLLLYSNSLEEVIPAELGYLQKLEVLDVSRNSLGGSIPSRLGNCSELSVLVLSNLFNPLPLVNRTGRDSSLEEIISINDELNYFDGAISAEITTLPKLSILWAPRVTLEGSFPSSWGTCDNLEMVNLAQNYFTGTFPNQLSRCKKLHFLDLSSNNLTGELAKELPVACMTVFDVSGNILSGSIPDFSYNTCPAVPSWNGNPFASDSPYPPYVYFFSSKFHNGTLLPLVGEVGLTVFHNFGNNNFTGMQSLPIAHDILGKQAVYTFLVGENKLTGPFPSSLFEKCDGLNAFLLNISYNQLSDQIPARFGGMCRSLKLFDVSGNQIVGPIPPSLGDLVSLVALNLSWNQLEGQIPTNLGQMKDLKFLSLADNNLTGSIPTSLGQLYSLEVLDLSSNSLTGEIPKGMENLRNLTDLLLNSNKLSGEIPTGLSNITSLTMFNVSFNNLSGSLPSNSNFMKCSTAIGNPFLRSCHMYSLTVPSADQQGRAADSYSSFATPPEATSERGGNGFNSIEIASITSASAIVSVLLALIVLFFYTRKWKPKSRVSGSTRKEVTVFNDIGVPLTYENVVHATGNFNVSNWIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGVQHFHAEIETLGRLRHPNLVTLIGYNASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIAMDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSCFGNGFNIVAWACMLLRQGRAKEFFTTGLWDSGPEDDLVEVLHLAVVCTVDSLSTRPSMRQVVRRLKQLQPPSC 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0422 1145 Gene3D Ribonuclease Inhibitor 353 493 IPR032675 -
Glsi12g0422 1145 SMART LRR_typ_2 675 698 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 194 217 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 170 193 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 218 242 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 264 288 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 627 651 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 312 336 IPR003591 -
Glsi12g0422 1145 SMART LRR_typ_2 699 723 IPR003591 -
Glsi12g0422 1145 Pfam Leucine rich repeat N-terminal domain 45 86 IPR013210 -
Glsi12g0422 1145 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 257 349 - -
Glsi12g0422 1145 PRINTS Leucine-rich repeat signature 675 688 - -
Glsi12g0422 1145 PRINTS Leucine-rich repeat signature 438 451 - -
Glsi12g0422 1145 SMART serkin_6 866 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0422 1145 SUPERFAMILY RNI-like 138 482 - -
Glsi12g0422 1145 Pfam Leucine Rich Repeat 266 288 IPR001611 GO:0005515
Glsi12g0422 1145 ProSitePatterns Protein kinases ATP-binding region signature. 872 894 IPR017441 GO:0005524
Glsi12g0422 1145 Pfam Leucine rich repeat 654 712 IPR001611 GO:0005515
Glsi12g0422 1145 Pfam Leucine rich repeat 190 231 IPR001611 GO:0005515
Glsi12g0422 1145 ProSitePatterns Serine/Threonine protein kinases active-site signature. 986 998 IPR008271 GO:0004672|GO:0006468
Glsi12g0422 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 830 941 - -
Glsi12g0422 1145 CDD STKc_IRAK 872 1140 - -
Glsi12g0422 1145 Gene3D Phosphorylase Kinase; domain 1 828 941 - -
Glsi12g0422 1145 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 361 452 - -
Glsi12g0422 1145 ProSiteProfiles Protein kinase domain profile. 866 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0422 1145 Gene3D Ribonuclease Inhibitor 246 352 IPR032675 -
Glsi12g0422 1145 Gene3D Ribonuclease Inhibitor 506 767 IPR032675 -
Glsi12g0422 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 524 766 - -
Glsi12g0422 1145 Pfam Protein kinase domain 868 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0422 1145 SUPERFAMILY Protein kinase-like (PK-like) 847 1137 IPR011009 -
Glsi12g0422 1145 Gene3D Ribonuclease Inhibitor 44 245 IPR032675 -
Glsi12g0422 1145 SUPERFAMILY L domain-like 556 767 - -
Glsi12g0422 1145 Gene3D Transferase(Phosphotransferase) domain 1 942 1142 - -
Glsi12g0422 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 942 1144 - -
Glsi12g0422 1145 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 308 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0422 Glsi-ChrGlsi12 14163501 14166938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0422 20 1145 Receptor kinase-like Gene Family AT3G02130 65.263 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Glsi12g0422 Pkinase 2.1e-43 CL0016