Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0374 ATGGTTCGTCAAGTTGATTTAGTTATCATTGGTGTCTCTGTTGGTTTGGCCTTTGGAATTTTGATAGCTTCTCTCATATATTTCGTCATAAGGTGGTACAAGAAACGTGCTCATCTTAGACGATGCGCAAATGAGCGTACTTTAACAACTCTTCCAATCCGCACAAATGGACTAGGAACAAGCACTGACTTCAGCGCCTCTCTCACAAGTTCCATAGCTGCTTCAAGGTCAGAAAATCTTCAGAAAAGTTCCCATTTCTCTTGGTGGAATTATCGAAAGAAAGAACAGTTTGTTTCAGCATCAGGCATTCTTAGATACTCATACAAAGAAATTCAGAAGGCCACAGAAAATTTCACAACTGTCTTGGGACAAGGGTCATTTGGCACAGTTCATAAAGCAACATTGCCTACAGGCGAGGTGGTAGCTGTGAAGGTGCTTGGTTCCAATTCAAAACAAGGGGAGAAAGAGTTCCAAACAGAGGTTCTTTTGCTAGGAAGACTACATCATAGGAATCTTGTGAATTTATTAGGATATTGTGTAGATAAAGGGCAGCGCATTCTGATATATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTCTACATGGTGAAGAAAAGGATTTAAGTTGGGATGAAAGGCTTCAAATTGCCGTTGATATTTCACATGGAATTGAATACCTTCACGAAGGAGCAGTGCCGCCAGTGATACACCGCGATTTGAAATCTGCCAATATATTGTTAGATCACTCAATGAGGGCTAAGGTTGCCGATTTTGGGCTCTCAAAGGAGGAGATCTTTGATGGGAGAAATTCTGGCCTAAAAGGTACATATGGCTACATGGATCCGTCGTACATTTCCTCTAACAAGTTTACAATGAAGAGTGACATTTACAGTTTCGGTATCATCATTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGATCGCGACGGTGTGGATGAGATACTTGACAAGCAACTTGTGGGAAAATGCAACCTAGAAGAAGTGAGGCAGCTTGCGAAAGTTGCACACAAATGCTTGCACAAAGCACCTAGGAAACGCCCCTCTATAGGTGAAGTTTCTCTGGGTATATTGAGGATAAAACAAAGGCGCCTTGCAAAAGAAAATACCATGTCATTTGCAGGTAGTAGCTTTTCCAGAGTTTTGAGCCGAATAGAGGATCAACAGGTTGAGTTAAGTAGGATAACCACCATGAACCAAAGGGAAACTGGATGA 1269 0.4129 MVRQVDLVIIGVSVGLAFGILIASLIYFVIRWYKKRAHLRRCANERTLTTLPIRTNGLGTSTDFSASLTSSIAASRSENLQKSSHFSWWNYRKKEQFVSASGILRYSYKEIQKATENFTTVLGQGSFGTVHKATLPTGEVVAVKVLGSNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRILIYEFMSNGSLENLLHGEEKDLSWDERLQIAVDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPSYISSNKFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDRDGVDEILDKQLVGKCNLEEVRQLAKVAHKCLHKAPRKRPSIGEVSLGILRIKQRRLAKENTMSFAGSSFSRVLSRIEDQQVELSRITTMNQRETG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0374 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Glsi12g0374 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Glsi12g0374 422 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0374 422 CDD STKc_IRAK 122 371 - -
Glsi12g0374 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0374 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
Glsi12g0374 422 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Glsi12g0374 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 390 - -
Glsi12g0374 422 Pfam Protein tyrosine and serine/threonine kinase 118 371 IPR001245 GO:0004672|GO:0006468
Glsi12g0374 422 Gene3D Transferase(Phosphotransferase) domain 1 192 396 - -
Glsi12g0374 422 SUPERFAMILY Protein kinase-like (PK-like) 83 371 IPR011009 -
Glsi12g0374 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0374 Glsi-ChrGlsi12 12917745 12921878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0374 102 371 Receptor kinase-like Gene Family AT3G19300 43.011 2.06e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Glsi12g0374 PK_Tyr_Ser-Thr 3.7e-51 CL0016