Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0371 ATGGCTAGGTCTGCGAAAGGCCAGCAAGAAGAATTTGATGATGACGACGAGGATCACTTGACTGGAAATGGCTCTTCTTCGCACAAAGTGAGGTTGGATGAAGCGACCAGGGAGCAGCGGGTTAACGCACATCGTTCAAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAAATTAATGAAAGATTTCAGATTCTGAGAGATCTCATACCTCAAAATGATCAAAAGAGAGATAAGGCTTCTTTCTTGTTGGAGGTTATTGAGTATATTCAATTTTTACAGGAGAAGTTACAAATGTATGAGCACTCTTACCAAGGGTGGAATCAGGAGCCAATGAAATTAATTCCTTGGAGAAATCATCGTGGGCCTGCAGAAAATATTACACACCCTTCACAAGCTATACAAAATGGCTATGGTCATGAGAACAATGATGTTATCTCTCCATCACTGCCCATAAATGCACAGAATGCAATAGAATCTGATTTGTCATCAACAATAATTCAGAAGGCCTGTCCCCCAGGTTTAGCTTCTGAAGCAGTTCCCTTGAGCATGCAAATGCAGTTGGACATGTTTGACCCGACTGTGAGCAGTGGTATGCCAACCCAACATTTGCATGAAGCAGTATCTAATGCTGAGAACATGCCTTCCCATACTCAGCCTCAGGTCTGTCTTGATAGACCAAGGGAGGGCGCTTGTGATTTTCCAGATAATACATTGAAGGAACAGGAGGAGCTGACATTTGAAAGTGGATCAGTTACCATCTCAAGTGCTTATTCTCAGGGAATATTGGATACTGTCACGCAAGCGCTACGGTATTCGGGTGTGGACTTATCCCAGGCCAATGTCTCAGTGCAAATTGATGTTGGGAGACAATCAATTACTGGTTTGACTGCCACCACATCCAGCTCAAAGGGTCATGAAAACCAGTTTGTGAACAATCAAGTGATGGCATGTTCAGAGGTTGATTACTGCAGTGAGGATTCTGAACAAACCCTTAAGAGGCTCAGAACAGAAGCAAGCTAG 1023 0.436 MARSAKGQQEEFDDDDEDHLTGNGSSSHKVRLDEATREQRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQMYEHSYQGWNQEPMKLIPWRNHRGPAENITHPSQAIQNGYGHENNDVISPSLPINAQNAIESDLSSTIIQKACPPGLASEAVPLSMQMQLDMFDPTVSSGMPTQHLHEAVSNAENMPSHTQPQVCLDRPREGACDFPDNTLKEQEELTFESGSVTISSAYSQGILDTVTQALRYSGVDLSQANVSVQIDVGRQSITGLTATTSSSKGHENQFVNNQVMACSEVDYCSEDSEQTLKRLRTEAS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0371 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 120 IPR036638 GO:0046983
Glsi12g0371 340 Gene3D - 41 114 IPR036638 GO:0046983
Glsi12g0371 340 MobiDBLite consensus disorder prediction 19 56 - -
Glsi12g0371 340 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Glsi12g0371 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Glsi12g0371 340 Coils Coil 90 110 - -
Glsi12g0371 340 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 2 337 IPR044295 GO:0003700|GO:0006351|GO:0046983
Glsi12g0371 340 SMART finulus 49 99 IPR011598 GO:0046983
Glsi12g0371 340 FunFam BHLH domain class transcription factor 41 113 - -
Glsi12g0371 340 CDD bHLH_AtBIM_like 42 118 - -
Glsi12g0371 340 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0371 Glsi-ChrGlsi12 12877065 12885266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0371 3 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.675 1.83e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g0371 HLH 1.6e-15 No_clan