Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0338 ATGGAACCACCGCCTACTTCTTCCACCAAAATCTCCAGCGGTAAGCTGCGTCTGATGTGCAGTTATGGCGGTCAAATATTGCCTCTTCCTCGCAAAAAACCTCTCTGCTACGCTGGTGGTGACACTCGCATCGTCGCCATTGACCGCCAGATTATTACCACGCTCGACTCTCTTGTTGCCCACCTCTCCGCTACTCTCTGTCTGAACTTCTCCTTCATTCTTAAGTACCAACTTCCCCATCTCGACCTCGACTCCCTCATCTCCCTCACCTCCGATGACGATTTCCAAATCCTCATTGACGAGCATGACCGTCTCTGTTCTGCTCCTTCTGCCGCGCCCTCCCGCATCAGAGTGTTCCTCTTCCCAACGAAACCGGTTTCGGGGCAGTCTGTTATTGATCACCCAAAAACTGAGGCTTGGTTTTTCGATGCGCTTAAAAGCGCTAAGATTATGCAAAAGGGGCGCCATTGCTTGATGAGCATCGAAGGTGAAGCTCGAGGGTATGGTTCTGGGGCTGGTGGTGGTGTTGAGGCTCAAAGTGGAGGAGAATTGAGTCATGGGTTTCTCTATTCTGGTCCTGAGTCGATGGTTTTGGAGACAACTTCGTCTTTTGGGTCAACTTCGTCTTCGGCTTCAATGAGCAATTTGCCTCCCGTAAAAGCTCTGGGTGAGGATAACGAGCTTAACTTACAGGGTAGTAAAGTAAAGTTGACCCCTTCAAATACTGTTACGAGTGATAGTTCTGGTTCAACTATTGTGCCCCACCATCAGAATACATCTTTCCAAGACCCTGTTGTTGATGCTTCTTCAATGGAGACCAGAGCTAATGCTGAAACCATTATATTAGAAAGTAAAATCCCTTATATTTTCCCTGGGATCATAGCAAATAACACGAATATGGAAGTAGGGTATCATTCATTTCCACACTTGAATCAAGATCAGGGGAAGCATGTTCAGTTTGTACAAGCTGGTGCCCGTTTTACACCCAATAACCCAAGGGGCCTGTTGCCAGTACTACCTTACCAGAAGATATACCAGCAACCACAGCAATTACAGCATCTGGTATATCATTCTAGTCAACCATACCCAGTATACCTTGTGCCAATTGGGCAGATACCACCCAACAATTTGCCTACAAAAGCTTCCTGCCAAGCTTCTTTGAATCTAAATGCCTCCTTTATGACTTCTCAGGTAGCTCACAACTCTGAGGGGGGAGCCAGGTCCCCTTTTGCTCCTGATTTTGCCACCCAGAATTACAGAGCAGCGAATTCAACGACATCTTCTTTTCATGTGCCTTATGATGGAAGTCAGCAACAAGAAAGTGATCTTCCTGCAATGTATCATGAATCAAAACCTGTTGCTATGACTACCAAAGAATCCCCTATGAATGGGATTGAACTTGATGGTGACCTTGCTCATGTTCAGATATACAAATCTCAGCCTCCACCTCCCTCATTGCCTTCTCAATACATAACCATGACAAAAGATACAACAGTGCTGTTATCAGAGGGTTTTTCTCAGTTGCATGTAGATAGCCTTAAGCAACTTACAGAAACATCACAACCACAATGA 1572 0.4593 MEPPPTSSTKISSGKLRLMCSYGGQILPLPRKKPLCYAGGDTRIVAIDRQIITTLDSLVAHLSATLCLNFSFILKYQLPHLDLDSLISLTSDDDFQILIDEHDRLCSAPSAAPSRIRVFLFPTKPVSGQSVIDHPKTEAWFFDALKSAKIMQKGRHCLMSIEGEARGYGSGAGGGVEAQSGGELSHGFLYSGPESMVLETTSSFGSTSSSASMSNLPPVKALGEDNELNLQGSKVKLTPSNTVTSDSSGSTIVPHHQNTSFQDPVVDASSMETRANAETIILESKIPYIFPGIIANNTNMEVGYHSFPHLNQDQGKHVQFVQAGARFTPNNPRGLLPVLPYQKIYQQPQQLQHLVYHSSQPYPVYLVPIGQIPPNNLPTKASCQASLNLNASFMTSQVAHNSEGGARSPFAPDFATQNYRAANSTTSSFHVPYDGSQQQESDLPAMYHESKPVAMTTKESPMNGIELDGDLAHVQIYKSQPPPPSLPSQYITMTKDTTVLLSEGFSQLHVDSLKQLTETSQPQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0338 523 SUPERFAMILY CAD & PB1 domains 34 127 - -
Glsi12g0338 523 Pfam PB1 domain 35 122 IPR000270 GO:0005515
Glsi12g0338 523 CDD PB1_UP2 19 121 - -
Glsi12g0338 523 SMART PB1_new 30 123 IPR000270 GO:0005515
Glsi12g0338 523 PANTHER OS05G0427100 PROTEIN-RELATED 7 416 - -
Glsi12g0338 523 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0338 Glsi-ChrGlsi12 9283279 9285925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0338 15 147 MAP Kinase Kinase Kinase AT5G57610 34.307 6.10e-18 85.9