Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0329 ATGGAACAACCCAGCACCACCCACGGCCCTGCTATTGCTCCGGCAACCTATCACGGAATTCGCATGCGAAAATGGGGCAAATGGGTTTCCGAAATCCGTGAGCCCGGCAAGAAAACCCGAATATGGTTAGGTAGCTACGAGTCACCAGAAATGGCAGCAGCAGCCTATGATGTAGCAGCTTTACAGCTCCGAGGACCCGCAGCGCGGCTTAATTTCCCAGAACTCGCCCGTAGCCTGCCCCGGCCCGTGAGCTCCAGAGCTGAGGATGTGCAGTTGGCAGCTCAACAAGCGGCATTGAGGTTCAAGAGACCGATGATCAGAGGGTCATCAGAGGAAGGTGACAATAAGAGTGGCGCACCGGCGACCGTGGGACTGTCACCAAGCCAAATTCAGGCCATAAATGAGTCACCATTGGATTCACCAAAGATGTGGATGCAAATGGCTGCTGAGGCTGCGCTCATGTTGGGGTTTGATGAGTCTATGTCATTTTATGATGATGATGATGTTTTAGAGTTAAGTGGATGGGAAGAAATGCAGCATGAGTCCCTATGGGAGTTCTAA 561 0.5223 MEQPSTTHGPAIAPATYHGIRMRKWGKWVSEIREPGKKTRIWLGSYESPEMAAAAYDVAALQLRGPAARLNFPELARSLPRPVSSRAEDVQLAAQQAALRFKRPMIRGSSEEGDNKSGAPATVGLSPSQIQAINESPLDSPKMWMQMAAEAALMLGFDESMSFYDDDDVLELSGWEEMQHESLWEF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0329 186 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 MobiDBLite consensus disorder prediction 105 126 - -
Glsi12g0329 186 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Glsi12g0329 186 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Glsi12g0329 186 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Glsi12g0329 186 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Glsi12g0329 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0329 Glsi-ChrGlsi12 9081357 9081917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0329 14 185 AP2-EREBP Transcription Factor Family AT1G71450 48.276 2.17e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g0329 AP2 2.4e-12 CL0081