Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0310 ATGGTTGACAAAGTAAAGGAAATACTCAATGGTATGCATGATACATATAAATCTTGTTATGGTGTTAAAAAATCAGAAGATGTTGGTCAATCTTCCCAATCTAGTAGAGATGTGAATATTTCATCAGTGGATGCTAAAGATTCTTTTATTATGGAATTTGACATGGATATGAGTAAGGATGATAATGTAGAGCACAAATCTGAGTTGGAAACATATTTAACGGATCCCCGAGAAAAGATGTCACCAAAGTTTGACATTCTTAGTTGGTGGAAGGTGAATTCTACTAGATTTCCCATTCTTGCTCAAATTGCTAGGGATGTATTGGCAATACCAATGTCAACAGTTGCTTCTGAATCAGCTTTTAGTACAGGGGGCCGAGTTCTTGATCAATATAGGAGTTCTTTATCTCCTAGAACAGTAGAAGCTCTTATTTGTGCACAAAATTGGTTTCGGTCTACCCCTTTATCTCTTGACATGGAAGAGCAAGCAGATGACATTGATAAGACTGAGATAGATGGAGATGCTCTTCTGCTCTACTATAGTGGGATACTTCAGTACTCTGGCATTCCAAGTGAGCCACCTCTTGTATTAGAAGAAAACCAATTAGCTCCTTCTTGGCCGTCACATGGAGAAGTAAATATTCATGATTTGCAGATCTTTGCGTTGATTGCTGGGATCAATAGATTTATATCTACCATCTTTATAATGGCTGCTAGACTCAAGTTTGAGAATTCGTGTGAAGTTGGGGTGTTTTCAAAACTTACCAACGCCTATTGTTTGGTTGCTCTTGGAGGCTCTGAAAATTTCTACAATGCATTTGAGGCTGAGTTAGCAGATGTTATACCTGTGGTGAAGGCATCCATTGCTGGTACACGTATTGTTGGTTGCCTTTGTGTTGTTATTACTGACACAGATGTGATGGTGGAAATGTATGAACGAGACCTGTTCTTTGAACTTCAACATTTGAGAAACAGCCTACCTGATCAAGTTGTTGTTCAACGTGTTGAAGAAAGATTATCTGCTCTAGGAAATTGTGTAGCATGCAATGATCATAGTATACCATGA 1065 0.3831 MVDKVKEILNGMHDTYKSCYGVKKSEDVGQSSQSSRDVNISSVDAKDSFIMEFDMDMSKDDNVEHKSELETYLTDPREKMSPKFDILSWWKVNSTRFPILAQIARDVLAIPMSTVASESAFSTGGRVLDQYRSSLSPRTVEALICAQNWFRSTPLSLDMEEQADDIDKTEIDGDALLLYYSGILQYSGIPSEPPLVLEENQLAPSWPSHGEVNIHDLQIFALIAGINRFISTIFIMAARLKFENSCEVGVFSKLTNAYCLVALGGSENFYNAFEAELADVIPVVKASIAGTRIVGCLCVVITDTDVMVEMYERDLFFELQHLRNSLPDQVVVQRVEERLSALGNCVACNDHSIP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0310 354 PANTHER BED FINGER-RELATED 6 160 IPR045259 -
Glsi12g0310 354 Pfam eIF-6 family 239 351 IPR002769 GO:0042256|GO:0043022
Glsi12g0310 354 SUPERFAMILY Ribonuclease H-like 5 152 IPR012337 -
Glsi12g0310 354 Gene3D - 234 353 - -
Glsi12g0310 354 SMART eIF6neu2 238 352 IPR002769 GO:0042256|GO:0043022
Glsi12g0310 354 Pfam hAT family C-terminal dimerisation region 68 150 IPR008906 GO:0046983
Glsi12g0310 354 SUPERFAMILY Pentein 236 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0310 Glsi-ChrGlsi12 8538150 8542133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0310 236 351 Eukaryotic Initiation Factors Gene Family AT3G55620 72.414 5.62e-53 173