Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0297 ATGGCTTCCCCAAGTTCTTCCCCTTCTGCAGTGCCACCAACTTCTGCTGATATTTCACCGCCACCACCTCCTTCTTCACCTTCCCCAATAAATTCTTCCGTCACATCACCATCTCCCACTTCTTCTCAGCCCAGTCAAACCTCTGATACTCCTGCTCCTACATCTTCTGATCCTGCAACCCCACCTCCTTCTCCCCCACAGGCAGTATCTGCAACCCCACCTCCGTCCCCGTCTCTTACTCCTCCACCACCATCGACACTGCCTCCAACTTCACCTCCGCCTTCCCCGCCAGATTCTCCACCACCAACACCTCCAGCATCTCCACCTCCGTCACCTACAAAATCAACCCCACCAACACCTCCAGCATCTCCACCACCGTCACCTACAAAATCGACCCCACCAACACCTCCAGCATCTCCACCTCCGTCACCTACAACATCAGCCCCACCAACAACTACCACTGCCCCTCCTCCAACTGGCACTTCACCTCCTCCTCCAAATGTATCCCCACCACCTCCAGTGGCAGATTCTCCCCCTCCCCAAGCCTCAGAGTCAGAGGCACCTCCTGCGGCAATTCCACCTCCCTCTCAACACATCTTACCTTCTCCTCCTCCTCCTGCTAATATCCCATTGCCACCATCCTCTAGTTCTCCACCTCCACCTCTAGGAAAGCCGCCAGAAAGTACTCCTTCTCTTACCCCCCCTCCATCTGTGTCTCAATCTGCTTCCCCTCCTTCCACAAATGTTCCCCCTCGATCCACATTGCTACCACCTCCTCCTTCAGTCCCTTCAGCCTCTTCACCTCCTCCAATTTTTTTGCCCTCTCCTACAACTAAATCATCAGCAGCTGGAGCCCCACCAGAGCCCCTACCCTCTATTCCAACTGAGAAACCGACTGCTAAATCAACTGATGGTACTGATATAACCACAAATTCACCACCTTCGCATCAAGGAGGGTTAAATCCGGGAGGCGCTGTGGCTATTGGCATTGTAGTTGGTTTTGTTGTCCTCAGCCTTGTTATGGCCATGTGGTTTGTACAGAAACGAAAGAGGAAGGAAAGAGGATCAAAAGTTGGTTATACCGTGCCTTCTCCATTTGCCTCATCTCAGAATTCAGGAACCTTATTTTTAAGGCCACAGTCTCCGGCTCCCTTTTTTGGTAGTGGCTCTGGTAGTGATTTCATGTATTCTCCATCAGATCCAAGTGGAGTAAGTAATTCAAGATCATCCTTCTTGTATGAAGAACTTATCCAAGCGACAAATGGGTTTTCAGCACAAAATCTTTTGGGTGAAGGTGGATTTGGTTGTGTCTTCAAAGGTTTGCTAACAGGTGGAAGAGAAGTAGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATTAGCCGAGTACATCATCGCCATCTGGTTTCCTTGGTGGGTTACTGTATATCAGAACATCAAAGATTGCTTGTCTATGACTATGTGCCCAACAATACCCTTCATTACCATCTCCATGGTAAAGACAGGCCAGTTATGGGCTGGGCTACCCGAGTCAAGGTTGCTGCTGGTGCAGCTCGAGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGACATTAAGTCTTCAAACATCCTTCTTGACAACAACTTTGAAGCTCAAGTTTCAGACTTTGGGCTTGCAAAATTAGCCTTGGATACATACACGCATGTAACCACACGTGTGATGGGAACATTTGGGTACTTGGCACCAGAATATGCAACAAGTGGGAAATTGACTGAAAAGTCTGATGTTTATTCCTTTGGAGTTGTGCTTTTGGAGCTAATTACTGGTCGGAAGCCTGTAGATACCTCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGACCTTTGTTGACTCAAGCCCTTGATAATGAAGACTTTGAAATATTGGTGGATCCAAGGCTAGAGAAGAACTATAATAGAAATGAAATGTTTCGGATGATCGAGGCCGCTGCAGCCTGTGTGCGTCACTCTGGAGCAAAGAGGCCGCGGATGAGTCAGGTTGTGAGAGCCTTAGATTCCTTAGATGAATTACCAGACCTCAATAATGGAATCAAACCTGGCCAGAGTTCAGTCTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTCAGGAGGATGGCTTTTGGCAGCCAGGATTACGGTACGAGTTATTTTAATGACTCTCAGACTAGCTGGAGTAGAGAGCAGGAGGAGCCAAGTACCATTTTCCCTCAAAATAGATCTGGACCATGGAACGTTTGA 2319 0.4851 MASPSSSPSAVPPTSADISPPPPPSSPSPINSSVTSPSPTSSQPSQTSDTPAPTSSDPATPPPSPPQAVSATPPPSPSLTPPPPSTLPPTSPPPSPPDSPPPTPPASPPPSPTKSTPPTPPASPPPSPTKSTPPTPPASPPPSPTTSAPPTTTTAPPPTGTSPPPPNVSPPPPVADSPPPQASESEAPPAAIPPPSQHILPSPPPPANIPLPPSSSSPPPPLGKPPESTPSLTPPPSVSQSASPPSTNVPPRSTLLPPPPSVPSASSPPPIFLPSPTTKSSAAGAPPEPLPSIPTEKPTAKSTDGTDITTNSPPSHQGGLNPGGAVAIGIVVGFVVLSLVMAMWFVQKRKRKERGSKVGYTVPSPFASSQNSGTLFLRPQSPAPFFGSGSGSDFMYSPSDPSGVSNSRSSFLYEELIQATNGFSAQNLLGEGGFGCVFKGLLTGGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGKDRPVMGWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVSDFGLAKLALDTYTHVTTRVMGTFGYLAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPIGDESLVEWARPLLTQALDNEDFEILVDPRLEKNYNRNEMFRMIEAAAACVRHSGAKRPRMSQVVRALDSLDELPDLNNGIKPGQSSVFDSAQQSAQIRMFRRMAFGSQDYGTSYFNDSQTSWSREQEEPSTIFPQNRSGPWNV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0297 772 CDD STKc_IRAK 429 699 - -
Glsi12g0297 772 Pfam Protein tyrosine and serine/threonine kinase 426 696 IPR001245 GO:0004672|GO:0006468
Glsi12g0297 772 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 333 742 IPR047117 -
Glsi12g0297 772 MobiDBLite consensus disorder prediction 250 275 - -
Glsi12g0297 772 Coils Coil 771 772 - -
Glsi12g0297 772 FunFam proline-rich receptor-like protein kinase PERK8 499 711 - -
Glsi12g0297 772 MobiDBLite consensus disorder prediction 55 241 - -
Glsi12g0297 772 SUPERFAMILY Protein kinase-like (PK-like) 399 696 IPR011009 -
Glsi12g0297 772 MobiDBLite consensus disorder prediction 296 318 - -
Glsi12g0297 772 ProSitePatterns Protein kinases ATP-binding region signature. 429 451 IPR017441 GO:0005524
Glsi12g0297 772 MobiDBLite consensus disorder prediction 1 320 - -
Glsi12g0297 772 Gene3D Phosphorylase Kinase; domain 1 397 498 - -
Glsi12g0297 772 ProSiteProfiles Protein kinase domain profile. 423 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0297 772 FunFam Proline-rich receptor-like protein kinase PERK8 395 498 - -
Glsi12g0297 772 Gene3D Transferase(Phosphotransferase) domain 1 499 709 - -
Glsi12g0297 772 MobiDBLite consensus disorder prediction 14 30 - -
Glsi12g0297 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Glsi12g0297 772 MobiDBLite consensus disorder prediction 31 54 - -
Glsi12g0297 772 MobiDBLite consensus disorder prediction 745 772 - -
Glsi12g0297 772 SMART serkin_6 423 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0297 Glsi-ChrGlsi12 8144527 8152143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0297 325 638 Trihelix Transcription Factor Family AT1G26150 67.192 6.28e-149 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi12g0297 PK_Tyr_Ser-Thr 1.9e-46 CL0016