Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0285 ATGGAAGATCAGTTTCGACACCAACCGCATGCAGAATCCATAGTTTGTCCAATTCAAGGCATGGAGTCTGTGGTGGCTACAGTGAGTGGTTACCATGGCTTAGAGCGATTCAACCTCATCAAGTTAATTTCACATGCTGGTGCATATTATGTTGGCTCTATGTATAAATCGATCACGCACCTAATTTGTTGGGAGTTTGAAGGCAAGAAATATGATCTTGCACGGAAATTCAAAACAATTATAGTAAACCACCAATGGGTTGAAGACTGCATAAAGCAAGGAAGGCGTGTTCCAGAGGAATCTTATATACTGAAAAGCGGACAAGAAGTAGGACCACTATCTCTGGAAGTTCCACTCATTGTTCAGGCAAGAAGCTTGACTAAGAATAAAGTGCCTGGTGATAGATCAGATGACATTGGCTCCAAAAAACAAACAACTGAGTTCAGCTCTGGTGCTTCTGAAAATTCTGTTTGGGATGATTCTTGTTTAATGAACAAGCATGAGGAGCCAATAACTTCTTCTAGACAGTCAAGGAAAGCCAAAAGAAAGATCTCCAATAGCAATGGAAAGGCTACTTCAGCTGGTCCTTCTCGTCTAGGAAGAAGGCTTGTGAAAAACAATTTTCATGAAGGGGTGTTGGATCCTTTACTCCTTGATTTAAACCCTGAGAGCTACCGTAATAGAATGCATGGATTCCATGCTGATCCTGCAGCTTCCTCTATCCTCTCGGATGGCCTCTTTACTCATCATATTCTAGAAAATAGAGATGGATCAGATGATAGATCAAATAATCAAAATGGAAGTACCAATGGAGCTTTAAATGGCATTGAACAGATCAAAGATTTAAATAATTTATCCACTCCTAGAATTTCAACTTTATCCGTTGAAGATGCCCCACCTACTATGGAGCAAACAGCAATAGATGAATGTTTTGAAAAATTCACAGATGGTGGTCAGGCTGATCATGTTGCTGACTTACCTATTTCAACAGAGTTGTCATGTGTCATATGTTTGACGGAGTTCAGCTCTACAAGGGGGGTTTTGCCTTGTGGACATCGATTTTGTTATTCATGCATCCAGACTTGGGTTGATCATAGGGCTACATTAAGAAAAAATTCAACCTGCCCCTTGTGCAAGTCAAGTTTTGACAGCATAGTTAAATATGAGGATGAAGCGGTTGATCAAAAAGTATACTCCCAAACAATCCCATGTGGCATTCCGATGTCAGATATTGTTATCCTTATGGATCGAGAACCACCAAACTATGGCTCCGAGTCCTCACAAGTAGGTGCTTGTGTTGGGTGCCGTGGGCGGGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCATATTCGACAAATCCATACCTATTGTCTGGACCCTCCTTTATTGCCATGGACATGCAGTCACTGCACGGATCTTCAGATGCTTTATCGTAATCACTCGCATTAG 1455 0.4158 MEDQFRHQPHAESIVCPIQGMESVVATVSGYHGLERFNLIKLISHAGAYYVGSMYKSITHLICWEFEGKKYDLARKFKTIIVNHQWVEDCIKQGRRVPEESYILKSGQEVGPLSLEVPLIVQARSLTKNKVPGDRSDDIGSKKQTTEFSSGASENSVWDDSCLMNKHEEPITSSRQSRKAKRKISNSNGKATSAGPSRLGRRLVKNNFHEGVLDPLLLDLNPESYRNRMHGFHADPAASSILSDGLFTHHILENRDGSDDRSNNQNGSTNGALNGIEQIKDLNNLSTPRISTLSVEDAPPTMEQTAIDECFEKFTDGGQADHVADLPISTELSCVICLTEFSSTRGVLPCGHRFCYSCIQTWVDHRATLRKNSTCPLCKSSFDSIVKYEDEAVDQKVYSQTIPCGIPMSDIVILMDREPPNYGSESSQVGACVGCRGREPEDLLMSCHLCHIRQIHTYCLDPPLLPWTCSHCTDLQMLYRNHSH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0285 484 SMART ring_2 334 378 IPR001841 -
Glsi12g0285 484 PANTHER F5A8.9 PROTEIN 166 481 - -
Glsi12g0285 484 Pfam Ring finger domain 333 379 IPR001841 -
Glsi12g0285 484 SUPERFAMILY BRCT domain 17 105 IPR036420 -
Glsi12g0285 484 MobiDBLite consensus disorder prediction 168 201 - -
Glsi12g0285 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 398 IPR013083 -
Glsi12g0285 484 Gene3D BRCT domain 18 109 IPR036420 -
Glsi12g0285 484 SUPERFAMILY RING/U-box 323 385 - -
Glsi12g0285 484 SMART BRCT_7 18 94 IPR001357 -
Glsi12g0285 484 MobiDBLite consensus disorder prediction 129 156 - -
Glsi12g0285 484 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Glsi12g0285 484 SUPERFAMILY FYVE/PHD zinc finger 420 475 IPR011011 -
Glsi12g0285 484 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Glsi12g0285 484 ProSiteProfiles Zinc finger RING-type profile. 334 379 IPR001841 -
Glsi12g0285 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 483 IPR013083 -
Glsi12g0285 484 MobiDBLite consensus disorder prediction 253 273 - -
Glsi12g0285 484 Pfam twin BRCT domain 24 86 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0285 Glsi-ChrGlsi12 7901288 7913978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0285 58 110 Core DNA Replication Machinery Family AT4G02110 51.852 1.88e-11 64.7