Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0275 ATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAGAGGAACACAACCGACAGCCATCCTTAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGCGATTGGAGAACTCATGAGAACTCATGGAACAACTTGTATAGCGTCTTAAAAGAAAATTCAATTGATTCTACAATTTCTATCAGATCGGGTACTTAG 339 0.4248 MHMWGHGSQYRKGPDSLRGTQPTAILRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHENSWNNLYSVLKENSIDSTISIRSGT 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0275 112 Gene3D Classic Zinc Finger 19 92 - -
Glsi12g0275 112 SUPERFAMILY beta-beta-alpha zinc fingers 54 89 IPR036236 -
Glsi12g0275 112 PANTHER ZINC FINGER PROTEIN WIP2 1 89 IPR043584 GO:0003700|GO:0010468
Glsi12g0275 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 99 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0275 Glsi-ChrGlsi12 7291416 7291754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0275 1 94 C2H2 Transcription Factor Family AT3G57670 84.043 1.26e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g0275 None None None