Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0261 ATGGGGACGCCAAGAAGAGAAGCTGTTCTATGTTTTGTCTCAGTGGCACTTTTCTGGCTTTCGAGTTCTGCAAATGCTTTGCTTTCGCCTAAAGGAGTAAACTTTGAAGTTCAAGCTTTGATGGGCATAAAAGCTTCTCTAGTGGATCCTCATGGCGTTTTAGATAATTGGGATGGAGATGCAGTTGATCCATGTAGCTGGACTATGGTCACCTGTTCCCCTGAGTATCTGGTCGTTGGCCTGGGCACTCCCAGCCAAAACTTATCTGGTACTCTATCTCCCAGCATAGGCAACTTAACGAACCTTCAGATTGTGCTGCTACAGAATAATAACATAACTGGTTCAATCCCTTCAGAGGTGGACAAGCTTTCTAAACTCCAAACTTTTGATCTCTCTAATAACAACTTCAATGGGGAAATTCCACCCTCTCTAGGTCACTTGAGAAGGCTCCAATACTTGAGACTCAATAATAACAGTCTTTCTGGAGAATGTCCAGAGTCACTGGCTAACATGACACAACTTGCTTTTCTTGACTTGTCCTACAACAATCTGAGTGGTCCCCTTCCCCGAATTTTGGCCAAATCATTCAACATTTTTGGAAATCCCCTCATCTGTGCTACAGGGAAAGAAAAAAACTGCCATGGGATGACACTGATGCCTATGTCAATGAACTTAAATAGTACAGAGAATGCTCTACCTTCTGGCAGACCAAAAACACACAAAATGGCCATCGCCTTTGGCCTGAGCCTAGGATGCCTCTGCCTGATAGTTCTTGCTTTTGGACTATTTCTGTGGTGGAGGCATAAGCATAATCAACAGGCATTCTTTGATGTCAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAGCTCCAGATAGCTACCAACAACTTTACCAACAAAAACATACTAGGAAAGGGTGGTTTTGGACATGTCTACAAAGGAGTTCTCCCAGATGGAACTCTTGTTGCTGTCAAGAGACTTAGAGATGGCAATGCCATTGGAGGAGAAATCCAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCATCGAAACCTCCTCAGATTATATGGATTTTGTATGACTCCCACAGAAAGGCTTCTAGTTTACCCATACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAGGGTAAACCAGTCTTGGACTGGGGCACTAGGAAGCAGATTGCCTTAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGAGATGTGAAAGCGGCCAACATATTGCTTGATGACTATTGTGAGGCAGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCACCAGAATATCTTTCCACAGGGCAGTCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAGTTGATAACAGGCCAGAGGGCTCTAGAATTTGGAAAAGCAGCAAACCAAAAAGGAGCTATGCTTGATTGGGTAAAGAAAATTCATCTGGAGAAGAAACTTGAACTGCTTGTAGACAAGGATCTCAAGAACAATTATGACCGGATCGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATATCTTCCAGGCCACAGACCTAAAATGTCTGAAGTAGTGCGAATGCTTGAAGGTGACGGACTGGCAGAAAGATGGGAAGCTTCTCAGAGAGCTGACACAACCAAGTGTAAACCCCATGAGTTCTCTTCATCAGATCGGTATTCTGATCTCACTGATGACTCTTCTTTGCTAGTCCAGGACATGGAGCTTTCAGGTCCAAGGTGA 1881 0.4428 MGTPRREAVLCFVSVALFWLSSSANALLSPKGVNFEVQALMGIKASLVDPHGVLDNWDGDAVDPCSWTMVTCSPEYLVVGLGTPSQNLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSEVDKLSKLQTFDLSNNNFNGEIPPSLGHLRRLQYLRLNNNSLSGECPESLANMTQLAFLDLSYNNLSGPLPRILAKSFNIFGNPLICATGKEKNCHGMTLMPMSMNLNSTENALPSGRPKTHKMAIAFGLSLGCLCLIVLAFGLFLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFTNKNILGKGGFGHVYKGVLPDGTLVAVKRLRDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHLEKKLELLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTKCKPHEFSSSDRYSDLTDDSSLLVQDMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0261 626 MobiDBLite consensus disorder prediction 586 606 - -
Glsi12g0261 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 586 - -
Glsi12g0261 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Glsi12g0261 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Glsi12g0261 626 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Glsi12g0261 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Glsi12g0261 626 SMART serkin_6 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0261 626 SMART LRR_typ_2 147 170 IPR003591 -
Glsi12g0261 626 SMART LRR_typ_2 123 146 IPR003591 -
Glsi12g0261 626 SMART LRR_typ_2 171 194 IPR003591 -
Glsi12g0261 626 SMART LRR_typ_2 99 122 IPR003591 -
Glsi12g0261 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Glsi12g0261 626 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515
Glsi12g0261 626 MobiDBLite consensus disorder prediction 586 612 - -
Glsi12g0261 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Glsi12g0261 626 SUPERFAMILY Protein kinase-like (PK-like) 283 576 IPR011009 -
Glsi12g0261 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Glsi12g0261 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Glsi12g0261 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Glsi12g0261 626 SUPERFAMILY L domain-like 36 198 - -
Glsi12g0261 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0261 626 Pfam Protein kinase domain 307 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0261 Glsi-ChrGlsi12 6924208 6928186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0261 7 626 Receptor kinase-like Gene Family AT5G16000 78.788 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi12g0261 Pkinase 1.4e-43 CL0016