Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0257 ATGATGAAGGAAGACACAAACAATGGCCGCGGCGGCACTTGGGCACGTATGTGTGACACGTGTAAGTCAGCGGTGTGCACTGTGTACTGCCGCGCTGACTCTGCATACCTCTGTACCGGCTGCGACGCTAGCATCCACGCGGCGAACCGCGTGGCGTCCCGGCACGAGCGTGTGTGGGTGTGCGAGGCTTGTGAGCGCGCCCCGGCTGCGTTTCTATGCAAAGCCGATGCTGCTTCTCTTTGCGCCACCTGCGACGCCGATATCCACTCAGCTAACCCCCTCGCGAGCCGCCACCAGCGTGTGCCGATTCTACCCATCTCCGGCTGCCTCTACGGACCACCAGCAACCCAGCTGGTGGGGACTGGTGCTGATGGTGAAGATGGGTTTCTAGCTCTCGGAGTTGATGAGGCGGAGGAGGAGGAGGAGGGTGTTGATGAAGAAGATGAAGATATCGCAGCTTCATGGTTGCTGCTGAATCCTGTGAAGAACAACAACAATCAGAGTAATAATGGATTATTGTTCAGTGGGGAGGTTGATGAATATTTGGACCTGATAGATTGCAATTCATGCGCTGATCAAAACCAGTTGGCTGATCATCATCAACAGTATAATCAGCACCAGCAGCAATATTACAGTATCCCTTCGAAGAACTACGTAGGGGATAGTGTGGTTCCAGTTCAGTGTGGACAACACCAGCAGCAAGCACAACATTTTCAGCTAGGATTAATGGACCTTGATTCCTCAAAAGCTGGAGCGTACAATTACAATGGTCCAATCAGTCAAAGTGTTTCAATTTCATCAACGGATGTTGGCATTGTACCAGAATCAACAATAAGTGATGCCTCAATTCCCCATTCAAGACCCCCAAAAGGTACCATTGATCTATTCTCTGGACCTTCAATTCATCAGATTCCTTCCCAGCTTGCTCCAATGGACAGGGAGGCAAGAGTTCTAAGATACAGGGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCTTATGCAGAGACCAGACCTCGTATCAAAGGTCGATTTGCCAAGAGAACAGATCATGTAGAAGCCGAAGTGGACCAGATGTTCTCCACAACATTAATGACAGAAACTGGATATGGCATTGTTCCCTCCTTCTGA 1152 0.4991 MMKEDTNNGRGGTWARMCDTCKSAVCTVYCRADSAYLCTGCDASIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCATCDADIHSANPLASRHQRVPILPISGCLYGPPATQLVGTGADGEDGFLALGVDEAEEEEEGVDEEDEDIAASWLLLNPVKNNNNQSNNGLLFSGEVDEYLDLIDCNSCADQNQLADHHQQYNQHQQQYYSIPSKNYVGDSVVPVQCGQHQQQAQHFQLGLMDLDSSKAGAYNYNGPISQSVSISSTDVGIVPESTISDASIPHSRPPKGTIDLFSGPSIHQIPSQLAPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDHVEAEVDQMFSTTLMTETGYGIVPSF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0257 383 Pfam CCT motif 313 355 IPR010402 GO:0005515
Glsi12g0257 383 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Glsi12g0257 383 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Glsi12g0257 383 CDD Bbox1_BBX-like 18 60 - -
Glsi12g0257 383 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Glsi12g0257 383 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Glsi12g0257 383 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 372 IPR045281 GO:0009909
Glsi12g0257 383 CDD Bbox1_BBX-like 60 103 - -
Glsi12g0257 383 SMART bboxneu5 13 60 IPR000315 GO:0008270
Glsi12g0257 383 SMART bboxneu5 61 103 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0257 Glsi-ChrGlsi12 6841102 6843845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0257 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 57.289 2.10e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi12g0257 zf-B_box 1.5e-07 No_clan