LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g0246	ATGCCTACCACGCTCACTCTTCCTTCCTCCTCAAAACCATCTGAATCCACCATTCCTTTTTCTCCAAGACACCGCAAATTTTTTTCCCATTGGGTGGTTGAATTTGAAACCATGCAGGCTAAGGAGGTTCCAGGACTTAATTATCTGCTACCTTCAAACCCGTCTCCACATCCACTTCATTACAGTGAGATTCAGAACAACATTAACGTATCCGAATTTCAAGTTCAAAGATTCTGCAATCAATTCATCAGTGGCTTTAAAAACCCTGCTCAAGTTCAAGACTTTAATTCTCCTCAATCATCATGCATCAGCAGCAATTCAACTTCTGATGAAGCAGATGAGCAACAGCAGCAACAACAAAGTCTCAGCATCATCAATGAGAGGAAACAGAGAAGGATGATATCGAACAGAGAATCTGCACGTCGGTCACGGATGAGGAAGCAGAGGCACCTTGATGAGCTCTGGTCACAGGTGATTTGGCTGAGAAGTGAGAATCACCAGCTGATAGATAAGCTGAACCATGTCTCAGAGTGCCACGACCAAGTCCTTCAGGAGAATGTTCAGCTGAAAGAGGAAACTTCAAAACTTCGTCAGATGGTAAGTGACATGCAGCTACACAGCCCCTTTTCTTCCTTGAGCCCACTGGAAGAAGTTCCTCGCAGTTCAGCCTATCTCAGATCTGATTCCTCAAGCCAGTCCCTTCAAAGTTCTATGGACCTGCTTGGCTAA	729	0.4472	MPTTLTLPSSSKPSESTIPFSPRHRKFFSHWVVEFETMQAKEVPGLNYLLPSNPSPHPLHYSEIQNNINVSEFQVQRFCNQFISGFKNPAQVQDFNSPQSSCISSNSTSDEADEQQQQQQSLSIINERKQRRMISNRESARRSRMRKQRHLDELWSQVIWLRSENHQLIDKLNHVSECHDQVLQENVQLKEETSKLRQMVSDMQLHSPFSSLSPLEEVPRSSAYLRSDSSSQSLQSSMDLLG	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g0246	242	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	126	189	IPR004827	GO:0003700\|GO:0006355
	Glsi12g0246	242	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	131	146	IPR004827	GO:0003700\|GO:0006355
	Glsi12g0246	242	FunFam	BZIP transcription factor	126	177	-	-
	Glsi12g0246	242	SMART	brlzneu	124	188	IPR004827	GO:0003700\|GO:0006355
	Glsi12g0246	242	MobiDBLite	consensus disorder prediction	94	147	-	-
	Glsi12g0246	242	MobiDBLite	consensus disorder prediction	130	147	-	-
	Glsi12g0246	242	SUPERFAMILY	Leucine zipper domain	128	177	IPR046347	GO:0003700\|GO:0006355
	Glsi12g0246	242	CDD	bZIP_plant_GBF1	129	180	IPR045314	GO:0003700\|GO:0006355
	Glsi12g0246	242	PANTHER	BASIC LEUCINE ZIPPER 43-RELATED	46	213	IPR044521	-
	Glsi12g0246	242	Pfam	bZIP transcription factor	128	183	IPR004827	GO:0003700\|GO:0006355
	Glsi12g0246	242	Gene3D	-	126	182	-	-
	Glsi12g0246	242	MobiDBLite	consensus disorder prediction	223	242	-	-
	Glsi12g0246	242	MobiDBLite	consensus disorder prediction	94	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g0246	Glsi-ChrGlsi12	6470177	6470905	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g0246	82	212	bZIP Transcription Factor Family	AT3G30530	68.939	2.95e-55	173

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi12g0246		bZIP_1	7.5e-13	CL0018