Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g0238 | ATGATACGTAAAAATGCAGTTCAAAGTATTTTGGCAGAGAGAGATATCCTTATATCAGTTCAAAATCCCTTTGTGGTTCTTGCATTGGAGTATTTACATTCTTTAAATGTGATTCATCGAGACTTGAAGCCAGATAACTTGTTGATTGGTCAAGATGGTCACCTCAAGTTGACAGATTTTGGGCTATCTACAGTTGGTCTTATCGACAGTACAAGTGACTTATCTGCACCATCTTTTTCCAATAATGGTTTCCTAGGAGATGATGAACCAAAAAAACAATATCCTTCAAAAAGGGAACAACGTAAACAACAGTCAGTAGTTGGCACCCCAGATTATTTGGCACCTGAGATACTTCTTGGAATGGGGCACGGTGCAACTGCTGATTGGTGGTCCGTGGGTGTTATACTTTATGAGCTTCTTGTTGGTATTCCACCATTCAATGCAAAACATCCACAAGTAGTAAGTTCCTTGGAAGAGGAAGATGGTCATTTTACATTCCAACAGGTCCTTTTGGAAAAGGATCAAATCTTTGATAACATAATTAACAGAGAAATACAGTGGCCCAAGGCACCTGAGGAGATCAGCTATGAAGCATATGATTTGATTGACAAATTACTGACTGAAAATCCATTCCAAAGAATAGGAGCAACAGGAGCCACTGAGGTTAAACAGCACATTTTCTTTAAGGATATCAATTGGGATACCCTTGCAAGGCAGAAGGCTATGTTCATACCATCAGCCCAAGCTCTTGACACAAGTTATTTCATGAGCCGGTACATATGGAATCCAGAAGATGAACATCTCACTGGAGATAGTGACTTTGATGACATGACTGAAACATGCTGCAGTGGTTCAGGCAGTGATTTCTTAGATGAAGATGGAGATGAGTGTGGCAGTTTAGCAGATTTCAGAGGACCAACTCTTGAACTGCAGTACTCATTCAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATGAACTATGATCTGGTGATTAAGAACTCCAAAGAATCACCTGATGACTGCAAACCATCTGTTTTGTGA | 1050 | 0.3971 | MIRKNAVQSILAERDILISVQNPFVVLALEYLHSLNVIHRDLKPDNLLIGQDGHLKLTDFGLSTVGLIDSTSDLSAPSFSNNGFLGDDEPKKQYPSKREQRKQQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAKHPQVVSSLEEEDGHFTFQQVLLEKDQIFDNIINREIQWPKAPEEISYEAYDLIDKLLTENPFQRIGATGATEVKQHIFFKDINWDTLARQKAMFIPSAQALDTSYFMSRYIWNPEDEHLTGDSDFDDMTETCCSGSGSDFLDEDGDECGSLADFRGPTLELQYSFSNFSFKNLSQLASMNYDLVIKNSKESPDDCKPSVL | 349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g0238 | 349 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 229 | 329 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
| Glsi12g0238 | 349 | SUPERFAMILY | Protein kinase-like (PK-like) | 25 | 257 | IPR011009 | - | |
| Glsi12g0238 | 349 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 25 | 303 | - | - | |
| Glsi12g0238 | 349 | ProSiteProfiles | Protein kinase domain profile. | 1 | 228 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi12g0238 | 349 | FunFam | Probable serine/threonine-protein kinase cot-1 | 22 | 249 | - | - | |
| Glsi12g0238 | 349 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 37 | 49 | IPR008271 | GO:0004672|GO:0006468 | |
| Glsi12g0238 | 349 | CDD | STKc_MAST_like | 1 | 233 | - | - | |
| Glsi12g0238 | 349 | MobiDBLite | consensus disorder prediction | 79 | 106 | - | - | |
| Glsi12g0238 | 349 | SMART | serkin_6 | 1 | 228 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi12g0238 | 349 | Gene3D | Phosphorylase Kinase; domain 1 | 246 | 261 | - | - | |
| Glsi12g0238 | 349 | Pfam | Protein kinase domain | 25 | 228 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi12g0238 | 349 | Gene3D | Transferase(Phosphotransferase) domain 1 | 25 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g0238 | Glsi-ChrGlsi12 | 6223170 | 6238146 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi12g0238 | 1 | 340 | AGC Kinase Gene Family | AT5G62310 | 62.725 | 2.57e-159 | 474 |
Transcription factors information