Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0232 ATGGTGAAGGAGTCAGTGAAAAGGTGCTCGCATTGTGGGAAAGATGGCCACAACTTAAGGACATGCATCGAGAACGATAAAGAGTGTTTAATGCTATTTGGAGTAAATATTCTGCAGAAGAAGCAAATTACAGGCGAGTCCATGAAGAAGAGTTGCAGTATGATAAACATCAGTTCTTGCGACATAGAGAATAAGAATGGCGATAAGGAAGATCCTGAGGCTGGGTATTTATCTGATGGCCTTGTTCATAGTAAGAGACGAAAGGCTACTCATGACAGAAGGAAGGGGAAGGCATGGACTGAAGAGGAGCACAGAGTTTTCCTTTCTGGTTTGAAGCAACTTGGAAAAGGTGATTGGAAAGGCATTTCAAGGAGCTTTGTGACAACTAGAACTCCAACCCAAGTTGCAAATAAATCTGTTGTACATAAACTTGCCCAGCCTAGGAGCTCTCAAATTATGACAACGACGAGTACTGTTGAGAAGACACGACAGCAGTCTATTGACAAAAACAAGATGGTAAATCAGTTCCCACATCTTTGCATGGATGATTCCACGGCTATTCCAGTGGCTGCTTCGACTTGTTTTCAAAATTATGAAGTGTTAACCAGTACGGTGAAACGTCCCAGCCATATGTATTTTGCCCACTTCGCCTTCCCCAAACCAGCTGTTTATCCTCATTTGCCTAAAATTCATGGGAACCTTGACGTTTTTCCAGTTATTTCCCATCCATCTGGCATTCCTTCACCGCAGTATCCTGTCTCACGTAGTTCATCTCAAGGAAGCCATGGGGAGAGCCAGAGTCATCCCGGAAGACAGAGCGCCCATTTCAGGACTACGGCCCCATTAGTGTGA 852 0.4425 MVKESVKRCSHCGKDGHNLRTCIENDKECLMLFGVNILQKKQITGESMKKSCSMINISSCDIENKNGDKEDPEAGYLSDGLVHSKRRKATHDRRKGKAWTEEEHRVFLSGLKQLGKGDWKGISRSFVTTRTPTQVANKSVVHKLAQPRSSQIMTTTSTVEKTRQQSIDKNKMVNQFPHLCMDDSTAIPVAASTCFQNYEVLTSTVKRPSHMYFAHFAFPKPAVYPHLPKIHGNLDVFPVISHPSGIPSPQYPVSRSSSQGSHGESQSHPGRQSAHFRTTAPLV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0232 283 ProSiteProfiles Zinc finger CCHC-type profile. 8 22 IPR001878 GO:0003676|GO:0008270
Glsi12g0232 283 MobiDBLite consensus disorder prediction 247 274 - -
Glsi12g0232 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 136 IPR006447 GO:0003677
Glsi12g0232 283 PANTHER TRANSCRIPTION FACTOR KUA1 7 139 - -
Glsi12g0232 283 SUPERFAMILY Homeodomain-like 93 139 IPR009057 -
Glsi12g0232 283 CDD SANT 98 138 IPR001005 -
Glsi12g0232 283 Pfam Myb-like DNA-binding domain 97 138 IPR001005 -
Glsi12g0232 283 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Glsi12g0232 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Glsi12g0232 283 ProSiteProfiles Myb-like domain profile. 91 138 IPR001005 -
Glsi12g0232 283 Gene3D - 99 145 - -
Glsi12g0232 283 MobiDBLite consensus disorder prediction 247 283 - -
Glsi12g0232 283 SMART sant 95 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0232 Glsi-ChrGlsi12 6132710 6136996 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi12g0232 Myb_DNA-binding 6.2e-09 CL0123