Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0205 ATGGAGAAATCTAAACGTTCCAATATCGACGACGTTGATTCAAAGAGCGGTTTCAATTCGGCTACCAGAACTTTCCACAGCCTCAGATCCCCAGTTCACCTTCCTCATCCTCACGCTCCTCTCTCAGTAGCAACCTATGCCTTCTCTCTCCGACACAACTCGCCCTGGTCTGACTCAGTTGCCTTGATCGACTCGGCCACCGCTCAACATGTTTCCTACTCCGAGTTCATCCATTGCTCAGAAACGTTAGCTACCAACCTCAGATCCCTCATAGGACTCTCCAAAGGGGACACAGCATTCGTATTGTCTCCCAACCTCATCAAGGTTCCGGTCCTATACTTCGCGTTACTCACTGTCGGTGTAATCATCTCTCCAGCTAACCCAATCAGCACACACGGCGAGATTTCCCATCTCTTCGAGCTATGCAGACCGGTCATTGCCTTTGCCACGTCATCCACGGCCCACAAACTGCCACATCTACGTCTTGGAGTCATCCTTCTCGACTCGCCCGAGTTTGACTTGCTGATGACGACGAGAAACAGTACAAAGAGCGTCCCACGCGCTGAGGTCAGTCAATCCGATTTGGCAGCTATTTTGTACTCGTCAGGCACCACGGGGAAGGTGAAAGGCGTGATGTTGACCCACCGGAATCTGATAGCATCAGCAGCGAGTTACAACGCGAATCGTCCTCAGAGGGAGAGCCCGGCGGTTTTCCTTCTTACGGTTCCATACTTTCACGTGTACGGGTTCACTTACAGCTTGCGGTCGGTGGTTTTGTCGGAGACGGTGGTGCTGATGGAGGAATTCAGTTTGAAAAAGATGTTGCGCGCGGTGGAGGAATTCGGCGTGACTCACCTTGCAGTGGTTCCGCCATTAGTGGTGGCGATGACCAAAGGAGATATAACGGACGGTTACGACTTGAGCTCTTTGGAAGGCATCACTTGCGGGGCGGCGCCGCTGGGAAAGGACGTCATCGCGACTTTCAAGTCCAAGTTCCCCAGAATAGTGTTGGTCCAGGGCTACGGATTAACAGAATCAACGGCGTCGATTAGCCGAACAATCGGCCCAGTGGAAACAAACCGGCCGGGAACAACAGGTAGGCTAATAGCAGGGGTCGAAGCAAAAATTGTAAACCCCAACACGGGACTAGCCATGTCTCCGGGGGAACAAGGGGAACTCTGGCTTAGAGGACCTTCCATAATGAAAGGTTATGTTGGTGACCCAGCAGCAACTTCGGCTAGTTTGGTAGATGGGTGGTTGAGGACTGGGGACTTGTGCTATATAGACAACGAAGGTTTCCTGTATGTTGTGGATAGATTAAAAGAATTGATCAAATACAAGGGATACCAGGTAGCCCCTGCAGAGCTGGAACACTTGCTCCTATCCCACCCAGAGATCAGCGACGCCGCAGTTATTCCTTACCCTGATGAAGAAGCTGGCCAGGTGCCCATGGCTTGTGTGGTAAGACAACCCCACAGCTCCCTTGGGGAAGCAGAAGTAATTGATTTTGTCACCAAACAGGTTGCTCCATACAAGAAAGTAAGGCACATAATATTTGTGGATTCCATACCAAAAAATGCAGCAGGAAAGATATTGAGGAAGGACTTAAATAAAATTGTCCACCAAAAATATCTCTCGAAATTGTAA 1647 0.5033 MEKSKRSNIDDVDSKSGFNSATRTFHSLRSPVHLPHPHAPLSVATYAFSLRHNSPWSDSVALIDSATAQHVSYSEFIHCSETLATNLRSLIGLSKGDTAFVLSPNLIKVPVLYFALLTVGVIISPANPISTHGEISHLFELCRPVIAFATSSTAHKLPHLRLGVILLDSPEFDLLMTTRNSTKSVPRAEVSQSDLAAILYSSGTTGKVKGVMLTHRNLIASAASYNANRPQRESPAVFLLTVPYFHVYGFTYSLRSVVLSETVVLMEEFSLKKMLRAVEEFGVTHLAVVPPLVVAMTKGDITDGYDLSSLEGITCGAAPLGKDVIATFKSKFPRIVLVQGYGLTESTASISRTIGPVETNRPGTTGRLIAGVEAKIVNPNTGLAMSPGEQGELWLRGPSIMKGYVGDPAATSASLVDGWLRTGDLCYIDNEGFLYVVDRLKELIKYKGYQVAPAELEHLLLSHPEISDAAVIPYPDEEAGQVPMACVVRQPHSSLGEAEVIDFVTKQVAPYKKVRHIIFVDSIPKNAAGKILRKDLNKIVHQKYLSKL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0205 548 SUPERFAMILY Acetyl-CoA synthetase-like 44 542 - -
Glsi12g0205 548 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Glsi12g0205 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 538 - -
Glsi12g0205 548 CDD 4CL 37 536 - -
Glsi12g0205 548 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Glsi12g0205 548 Gene3D - 31 441 IPR042099 -
Glsi12g0205 548 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Glsi12g0205 548 Gene3D - 442 546 IPR045851 -
Glsi12g0205 548 Pfam AMP-binding enzyme 56 446 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0205 Glsi-ChrGlsi12 5379552 5395507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0205 12 548 Monolignol Biosynthesis Gene Families AT5G63380 50.814 0.0 545