Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0199 ATGGACCGCTTTTCCATCAACGTCGTTGTCTTCCTCATCAGTGCCGTAACTCTCTCTGGTGTTGTTGCTGGTGACCGAGACCTCATCGAAGATGTTCTCCGCTTGCCCTCCCAAGTTTCGAGAAGTGGTTCAGGTGGAATGGGTATCTGCATATCCACTGCATCTTCTGAGATTCACGAAGCTCCTGAAGAAACTCATGATGAGAACGTAATCATATTTGAAGCAAGCAAAATTCCAAGTGGAACTCAGAGACTTGCCTCCGTTTACTCTAAGAAGGGTAGCAAAGGACTCAACCAGGATGCTGCCACTCTTTACCAGGGTTATGAGATGGAAGATGGAGTATTTTGTGGCATTTTTGATGGGCATGGAAGGAATGGTCGCATAGCGAGCAAAATAGTGAGTAACCGTTTGCCTTTACTCTTACTGAGCCAAAAGAAATCTCTCGCAAAAATCGATAGCTTAGATGATGGCGGCGATGAAATCTCAAACCATGTTGACTCAGCTCCAAACAAGTATTTCCAGAAATGGAAAAAAGCTATAACGAGTGCCTTCATGGTGATGGACAAGGAGTTGGAGCTAAAAGAGAATCTAGACCTCTCTTGTAGCGGAACAACTGGTGTAGTTATCGTAAGACAGGGTGAAGATCTTATCGTAGCTAATCTTGGGGACTCAAGAGCAGTCTTGGGGACAATCTGTGATGATGAAATCACTGCCGTTCAACTGACCACTGATTTGAAGCCTGGATTACCTCATGAAGCAGATCGAATAAGGAAGTGCAATGGGCGCGTATATGCACTAAAGGAAGAACCACACATCCAGCGAGCGTGGTTACCCGACAATGAGAACTCTCCAGGCTTAGCTATGTCTCGAGCCTTCGGAGATTTTCTGCTTAAAGACCACGGCATCATTGCGGTCCCAGATATCTCATGTCGCCGTCTAACATCCAGTGATCAATTTATTGTCCTTGCAAGTGATGGGGTATGGGATGTACTAAGCAACAACGAAGTTGCCTCAGTTGTGTGGAAAGCAGATACTGAGGAGGCAGCATCAAAAGCAGTAGTGGAAGCAGCCACTATTGCCTGGAACAAGAAGTACCCTTTTTCTAAGCAACATAGTGGAGACGGTTGCAAAATTATGGCAATAGTAATAATGGCGAGAATAGTAAAGGGAGATAGTGGTAGTAGTAATGACACAGCTATGGCTGTAAGATTCTCATTTCGCTATCTCCAATAA 1233 0.4493 MDRFSINVVVFLISAVTLSGVVAGDRDLIEDVLRLPSQVSRSGSGGMGICISTASSEIHEAPEETHDENVIIFEASKIPSGTQRLASVYSKKGSKGLNQDAATLYQGYEMEDGVFCGIFDGHGRNGRIASKIVSNRLPLLLLSQKKSLAKIDSLDDGGDEISNHVDSAPNKYFQKWKKAITSAFMVMDKELELKENLDLSCSGTTGVVIVRQGEDLIVANLGDSRAVLGTICDDEITAVQLTTDLKPGLPHEADRIRKCNGRVYALKEEPHIQRAWLPDNENSPGLAMSRAFGDFLLKDHGIIAVPDISCRRLTSSDQFIVLASDGVWDVLSNNEVASVVWKADTEEAASKAVVEAATIAWNKKYPFSKQHSGDGCKIMAIVIMARIVKGDSGSSNDTAMAVRFSFRYLQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0199 410 SMART PP2C_4 75 383 IPR001932 -
Glsi12g0199 410 Pfam Protein phosphatase 2C 114 349 IPR001932 -
Glsi12g0199 410 PANTHER PROTEIN PHOSPHATASE 85 378 IPR015655 GO:0004722|GO:0006470
Glsi12g0199 410 ProSiteProfiles PPM-type phosphatase domain profile. 85 404 IPR001932 -
Glsi12g0199 410 SUPERFAMILY PP2C-like 75 359 IPR036457 -
Glsi12g0199 410 Gene3D - 69 404 IPR036457 -
Glsi12g0199 410 CDD PP2Cc 84 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0199 Glsi-ChrGlsi12 5278720 5283164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0199 47 349 PP2C-type Phosphatase Gene Family AT5G26010 52.733 8.08e-102 304