Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0196 ATGCTGAGCTTGAGGAACAGGATGCTTCAATTGGTAAGGAACAAATCTTTTACCACCTCAGCAGAGCGTGAAATTTTGAGGGATGTGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACTGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTACGAGTTGCCTGATAGGCAGGTCATCACTACTGGTGCTGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCTTTGATTGGAATGGAAGCAGCAGGCATTCACGAGACAACATTCAACTCTATTATGAAGTGCGATAGCAGGAAAGACCTGTATGGTAACATTGTCCACTCAGGAGGTTCAACCGTGTTTCCGGGCATTGCTAACAGAATGAGCAAGGAGATCTCTGCATTAGCCCCAAGCAACATGAAGATCAAGGTGGCTGCACCACCTGAGAGCTAG 453 0.4768 MLSLRNRMLQLVRNKSFTTSAEREILRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDRQVITTGAERFRCPEVLFQPSLIGMEAAGIHETTFNSIMKCDSRKDLYGNIVHSGGSTVFPGIANRMSKEISALAPSNMKIKVAAPPES 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0196 150 Gene3D Actin; Chain A, domain 4 3 81 - -
Glsi12g0196 150 FunFam Actin, alpha skeletal muscle 4 88 - -
Glsi12g0196 150 FunFam actin, alpha sarcomeric/skeletal-like 89 150 - -
Glsi12g0196 150 Pfam Actin 4 148 IPR004000 -
Glsi12g0196 150 SUPERFAMILY Actin-like ATPase domain 11 149 IPR043129 -
Glsi12g0196 150 SMART actin_3 1 150 IPR004000 -
Glsi12g0196 150 Gene3D - 82 150 - -
Glsi12g0196 150 PANTHER ACTIN 6 142 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0196 Glsi-ChrGlsi12 5197201 5197897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0196 13 149 Cytoskeleton Gene Families AT3G12110 84.892 1.63e-82 246