Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0194 ATGACTGGAAAACCGGAAGAGTCTCTCTCTCTCCCTCTCTCTCCCCTTCTCTGTTCTCCGTCGCCCTCGCCTTCCATCCTTCCTCCCTCGGCAATTCCCAAGGTCTTATTCTTCAATCCCTTCAATTCTTTTACGTTTTCATCTCGATCTGCTTTAATGGTGCTTAGATCTGTTCCTTGCATTTCCATTCAACAATTGATCGGGGATGCGCTTGAAATTCGCGTTTTTTTTCCTGAATTCGGATGTAGGGTGGATTCCTGCCTGCATTTTGATTTAGTTCATCTGTGCGAGAAGATGGCAGAAGCTGAGGATATTCAACCTCTTGTTTGTGATAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGTATGGGCCAAAAAGATGCATATGTAGGTGATGAGGCACAGTCTAAGCGTGGTATTCTGACTCTCAAGTACCCCATTGAGCATGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTCTTAACCGAGGCTCCACTTAATCCCAAGGCTAACCGTGAGAAGATGACTCAAATTATGTTTGAGACTTTTAATACTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTATATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTTAGCCACACAGTTCCTATCTACGAGGGTTATGCCCTCCCACATGCCATTCTTCGTCTTGACCTGGCTGGTCGTGACCTCACTGAATTCCTGATGAAAATTCTGACAGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAGCTAGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACTGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCTTTGATTGGAATGGAAGCAGCAGGCATTCACGAGACAACATACAACTCTATTATGAAGTGTGATGTTGATATCAGGAAAGACCTTTATGGTAACATTGTCCTCTCAGGAGGTTCAACCATGTTTCCGGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCATTAGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCAATTTTGGCATCCCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCCGAGTATGATGAATCTGGACCATCAATTGTGCATAGAAAATGCTTCTAA 1428 0.458 MTGKPEESLSLPLSPLLCSPSPSPSILPPSAIPKVLFFNPFNSFTFSSRSALMVLRSVPCISIQQLIGDALEIRVFFPEFGCRVDSCLHFDLVHLCEKMAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEFLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0194 475 PANTHER ACTIN 107 468 IPR004000 -
Glsi12g0194 475 CDD NBD_sugar-kinase_HSP70_actin 108 281 - -
Glsi12g0194 475 FunFam Actin, alpha skeletal muscle 101 260 - -
Glsi12g0194 475 Gene3D - 108 469 - -
Glsi12g0194 475 ProSitePatterns Actins and actin-related proteins signature. 204 216 IPR020902 -
Glsi12g0194 475 SUPERFAMILY Actin-like ATPase domain 104 253 IPR043129 -
Glsi12g0194 475 Gene3D - 238 438 - -
Glsi12g0194 475 SMART actin_3 105 475 IPR004000 -
Glsi12g0194 475 FunFam Actin, alpha skeletal muscle 429 475 - -
Glsi12g0194 475 ProSitePatterns Actins signature 1. 153 163 IPR004001 -
Glsi12g0194 475 Gene3D Actin; Chain A, domain 4 280 371 - -
Glsi12g0194 475 ProSitePatterns Actins signature 2. 456 464 IPR004001 -
Glsi12g0194 475 FunFam Actin, muscle 280 371 - -
Glsi12g0194 475 SUPERFAMILY Actin-like ATPase domain 247 475 IPR043129 -
Glsi12g0194 475 FunFam Actin, alpha skeletal muscle 353 428 - -
Glsi12g0194 475 Pfam Actin 103 475 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 336 352 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 215 228 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 240 259 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 149 160 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 126 135 IPR004000 -
Glsi12g0194 475 PRINTS Actin signature 161 183 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0194 Glsi-ChrGlsi12 5142594 5146726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0194 99 475 Cytoskeleton Gene Families AT3G12110 97.082 0.0 768