Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0180 ATGACAACAGCGACACTCAATCTCTTGCTTCGTTTTGAGGACCATAGTTGGAGGACGGAAATGGTTTCAGCTTTCTTCCCTGGTAGAAAATCCCATTCCGATTTCTCCAAGTCACTCTACCCTATAATCCATCGAGCTCGATGTTTCCCTTGTATATATTTTCTTATGGATCGTAGCTTTTCCGGCTTCTATGTCTTCCTTTCTGCATTTTCTTCTATCGTTCCGGGATTTTCGATTTTTAATATAATACATTACTGGATGGGAGATCATTTTATTCTGTTGGTTGATCAGCGACTCACTGCTTCTACTCTTAAAGCTGCTGTTGAGAATGGAAGGAGCTTGCAGCAAGCAATTCCCTCATCAAGCAATTATATGAGTTTTTCACATGAAATGGATGAGGAAACTAGTTCAACCGCTACAAAATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGACTCAAACATGGAGACACCCTGTTCTTGTTGTGGCAGTTTGAAGTATGCACATAAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACCATCTGTGAGATTTGCCAACAGCAATTCAAGCCTGGCTATACAGCACCCCCTCCACTATTCTATTATGGTAGTTCTCCATTGAATTTTAGAGGTAATTGGGAGATTTCCAGAACGGATCTGCATAATCATCAGTTCATAGCAATGGTTGCTTCTGATAACGAATTCTTGGACACTGACTTGCAATATTCACCTCCCTCTACAAGGAGCCCAATCTGCTGTCGCATCGTTGCTATCATTTTTATTGTTCTTCTTGTTTTACGCCATACACTCCCAATTATACTCAGTGGAGAAGGGGAATTTTCATTGACCCTCTTTATGTTACTGGTCTTGAGAACCATGGGAATACTTCTACCTGTATATATAATGGTTAAAGCTTTTACTGTAATCCAACGGCGACGACACCAGGATCGTTTCTCCCCTGTGCCATCACAACAGGAAAATGACTTAGGACAGCCTCAGTCTCGCGTCAGTCATATTTTGTAA 1038 0.4114 MTTATLNLLLRFEDHSWRTEMVSAFFPGRKSHSDFSKSLYPIIHRARCFPCIYFLMDRSFSGFYVFLSAFSSIVPGFSIFNIIHYWMGDHFILLVDQRLTASTLKAAVENGRSLQQAIPSSSNYMSFSHEMDEETSSTATKLVQCRICHDEDEDSNMETPCSCCGSLKYAHKKCVQRWCNEKGDTICEICQQQFKPGYTAPPPLFYYGSSPLNFRGNWEISRTDLHNHQFIAMVASDNEFLDTDLQYSPPSTRSPICCRIVAIIFIVLLVLRHTLPIILSGEGEFSLTLFMLLVLRTMGILLPVYIMVKAFTVIQRRRHQDRFSPVPSQQENDLGQPQSRVSHIL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0180 345 Pfam RING-variant domain 145 190 IPR011016 GO:0008270
Glsi12g0180 345 CDD RING_CH-C4HC3_MARCH 145 191 - -
Glsi12g0180 345 SMART ringv_2 144 191 IPR011016 GO:0008270
Glsi12g0180 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 199 IPR013083 -
Glsi12g0180 345 MobiDBLite consensus disorder prediction 325 345 - -
Glsi12g0180 345 ProSiteProfiles Zinc finger RING-CH-type profile. 137 197 IPR011016 GO:0008270
Glsi12g0180 345 MobiDBLite consensus disorder prediction 322 345 - -
Glsi12g0180 345 Pfam Protein of unknown function (DUF3675) 196 310 IPR022143 -
Glsi12g0180 345 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 87 321 IPR033275 -
Glsi12g0180 345 FunFam Zinc finger family protein 133 200 - -
Glsi12g0180 345 SUPERFAMILY RING/U-box 143 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0180 Glsi-ChrGlsi12 4833084 4837021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0180 130 191 C3H Transcription Factor Family AT2G37950 43.077 1.27e-07 49.7