Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0176 ATGGCTTTACAAAACATTGGTGCTGGAAATAGTGATGATGCCTTCTACAGATATAAGATGCCCAAAATGATTACCAAAATTGAGGGTAGAGGTAACGGCATCAAAACTAACATAGTCAATATGGTTGATATTGCGAAGGCATTGGCAAGGCCTGCCTCTTACACAACAAAGTATTTTGGTTGTGAGCTTGGAGCCCAATCTAAATTTGATGAGAAAAGTGGGACTTCTCATGTTAATGGGGCACATGATACTTCAAAACTTGCTGGACTTCTTGAGAATTTCATTAAAAAATATGTTCAATGTTATGGTTGTCGAAACCCTGAAACTGAGATTCTGATCACAAAGAATCAAATGATCCAGCTGAATTGTGCTGCTTGTGGCTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACTACTTTTATTATAAAGAATCCTCCTGAATCTAAGAAAGGGTCCAAAGACAAGAAAGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGGGAAGTAGCTGATGAGGAACTGAAAAAATTGAAGAAAGAGGTTAAGAAAAAGGGTTCTTCCTCTTCCAAAGATGGAACAACAAAATCTAGCTCTTCAAAGAAGAAAGCTAGTGGCTCTGATGAGGATCGTGCATCACCCACGCACAGTCAAATTGATGAGGAGGCTCATGTTGAAGATGATGATGACATCCAATGGCAAACAGATACGTCACTGGAGGCTGCACGCCAACGTATTCAAGAACAGTTAAGTGCTGTGACAGCTGACATGGTCATGCTCTCCACAAATGAGCCAGAGAAGAAAGCAAAAGCAGCAAATAAGGTAAGTGATGGTTTTGAAAATGGTAACTCGATGCCCTGCAGGACTCTGAAAGAGGAAGTGAAAGCACATTTGAAGAAAGGTGTTTCTGCAAATGAACTGCAACTCCATTTAGCAGCACTTTCTTCATCTTCTCAGGAGAAGATACGTGCTCTATTTGAGGCTTTGTTTGATGGTGTTGAGAAAGGGTTTGCCAAAGAAGTGGTCAAGAAGAAAAACTACCTTGCTGCTGCTGTTGCTGAGGAATTGGGATCGCAGTTGTTATTGCTTCATGCAATTGAGGATTTTTGTTGCATGACCAGTTCAAATGCTTTAAAGGAGGTTGCCCTTGTTCTTAAGGCACTCTATGATGTTGATTTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGGCTGAAGGGAGGTAACAAGGACTCTAAGATATGGAAGAATGCTCAACCCTTCATTGATTGGCTTCAGAATGCGGAATCAGAATCAGAGGAAGAATAG 1320 0.4144 MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKSGTSHVNGAHDTSKLAGLLENFIKKYVQCYGCRNPETEILITKNQMIQLNCAACGFVSDVDMRDKLTTFIIKNPPESKKGSKDKKAMRRAEKERLKEGEVADEELKKLKKEVKKKGSSSSKDGTTKSSSSKKKASGSDEDRASPTHSQIDEEAHVEDDDDIQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEPEKKAKAANKVSDGFENGNSMPCRTLKEEVKAHLKKGVSANELQLHLAALSSSSQEKIRALFEALFDGVEKGFAKEVVKKKNYLAAAVAEELGSQLLLLHAIEDFCCMTSSNALKEVALVLKALYDVDLLEEEHIVQWYQKGLKGGNKDSKIWKNAQPFIDWLQNAESESEEE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0176 439 Gene3D - 3 104 - -
Glsi12g0176 439 MobiDBLite consensus disorder prediction 144 233 - -
Glsi12g0176 439 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Glsi12g0176 439 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Glsi12g0176 439 Pfam eIF4-gamma/eIF5/eIF2-epsilon 361 439 IPR003307 GO:0005515
Glsi12g0176 439 SUPERFAMILY ARM repeat 291 433 IPR016024 -
Glsi12g0176 439 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Glsi12g0176 439 CDD W2_eIF5 294 437 - -
Glsi12g0176 439 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Glsi12g0176 439 Coils Coil 429 439 - -
Glsi12g0176 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 438 IPR045196 GO:0003743|GO:0006413
Glsi12g0176 439 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Glsi12g0176 439 SMART 542_3 347 435 IPR003307 GO:0005515
Glsi12g0176 439 MobiDBLite consensus disorder prediction 148 224 - -
Glsi12g0176 439 ProSiteProfiles W2 domain profile. 282 439 IPR003307 GO:0005515
Glsi12g0176 439 Gene3D - 287 439 - -
Glsi12g0176 439 Gene3D - 105 145 - -
Glsi12g0176 439 FunFam Eukaryotic translation initiation factor 5 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0176 Glsi-ChrGlsi12 4787068 4788387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0176 1 432 Eukaryotic Initiation Factors Gene Family AT1G77840 63.098 0.0 511