Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0172 ATGATCAGTGCAGAAACTCCAATTCTGGTGGCCAAAGCATGTGAGCTATTCATTCAAGAGCTCAGCCTTCGTGCCTGGACGCACACTGAAGGAAGCACGAGGCGCACAATGCAGCCTTGTGACATTGCTAAGGCCATTAAGCAATATGAAATCCTTGACTTTTTAGCTGATGTTGTCCCAATGGAGAATGACGATAGTGACGGCAAGGAAGCTGATTCTGGAAAAGTTGCAGAAGGAACCCATGTAACCGAGCCTTGTACTGCTGCTTTTATGAACAATCCTGTGATGAATATGGCCACTGAGGTGGGTGAAACTAACCAACAATTTCCTGAACCCTACATGATGCAGCCACCGTTTCTGCCGTCTGCTCAATTTCCCCACAATTTCCATCCAATGGTAAGGGTATTTTTTCCATCTCAAGCTCTCTTATTTATTATTGCAGTGAACCAAGAAATGCATTCTGATGTGCTTATAACTAGTGTTGAAGATGGAAACAACCTTAGTTCTTCTTTGGCAGTACTGGCGTAG 528 0.4432 MISAETPILVAKACELFIQELSLRAWTHTEGSTRRTMQPCDIAKAIKQYEILDFLADVVPMENDDSDGKEADSGKVAEGTHVTEPCTAAFMNNPVMNMATEVGETNQQFPEPYMMQPPFLPSAQFPHNFHPMVRVFFPSQALLFIIAVNQEMHSDVLITSVEDGNNLSSSLAVLA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0172 175 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 75 - -
Glsi12g0172 175 Gene3D Histone, subunit A 1 61 IPR009072 GO:0046982
Glsi12g0172 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 46 IPR003958 -
Glsi12g0172 175 SUPERFAMILY Histone-fold 1 60 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0172 Glsi-ChrGlsi12 4677815 4678904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0172 1 128 CCAAT-HAP5 Transcription Factor Family AT1G54830 41.791 2.61e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi12g0172 CBFD_NFYB_HMF 5.1e-07 CL0012