Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0167 ATGGCTTACCAGTCCTCGCCAATGCATAGACCCCAAACCCTAAACTCCGTTCAGTTGTTCCTTGCTGCCCACGATTCGCAGCATCCTTCGCCCCTGCCACCGTCACTCTCTCTCCTGGCACACCACTCCTCTCTTCCTCCTCTTCCGTCAACTTTCCCCCAATCCAAACTCATCCCAAAAACCCGTTTTGTGGTGGACGCATTCCGCTATGCCGGTGATTTTTCGGTCTCCTACTTTCTTACCCATTTCCACTCTGATCACTACACTGGTCTTAACCCCAATTGGTCCAAAGGCATTATTTTTTGCTCAAACACCACTGCTCGGCTTCTGGTTGAAGTGCTGAAAGTCCCTTCGAAGTTCGTAGTCCCTGTACCGCTTTGCGAGCCGGTTGAGATTGATGGCTGTGAAATTACTCTGATTGATGCAAATCATTGCCCTGGTGCGGTCCAATTCTTGTTCAAAATTCCGGGTGTTGATGGAAACTCTGAGAGGTATCTTCACACGGGTGATTTTCGGTTTTCTAATGCAATGACATCAGAGCCTCTCCTTGCTTCATTTGTGGGTGCGGATGCTGTATTTTTGGACACAACCTATTGTCACCCAAAGTTTCAATTTCCTACCCAAGAAGAGTCTGTTGCTTATGTGGTGGATGTAGTAGGGAGGATTGGAGGCGAATATGATTGTTCATTGAGAAATGTTTTGTTTCTTATTGCTACTTATGTTGTTGGCAAAGAGAAGATTTTGCTTGAACTTGCGCGTAGGTTTAAACGTAAAGTGCATGTGGACGCTAGAAAAATGGAGGTTTTGCGGGTACTTGGGTTTGGGGAAAGCGGTGAGTTTACAGAGGATGACTCTGAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCGTACTTTAGGCCAAACTTTGTCAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCCAAGGTTGTAGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCACAATAGATTTACTGTGAAGTCCAAGGATTCGTTTCAGATTCATCTTGTACCATATAGTGAGCATTCAAACTATGGTGAGCTCAGGGAATATGTAAAGTTTTTGAAACCAAAGCGAGTTGTTCCCACAGTGGGTGTGGATGGTGAGAAAACTGACAGTAAACATGCCAACAAAATGATGAAGCATTTTGCTGGATTAGTTGATGAGACAGCTAACAAGCAGGAATTTTTAAGGGGTTTTCACCGAGCATCTGGTGATGTGGATTGCAAGTTTGAAAAGGATGGAAGTAATGTCCTGAAGCCAGGGCAGAACATGGAGACAGAAGTGAAGTTATCTGATGAGGAAGATAATAAAATTATTAGTTCAGATTTTGTTTTAAATTTGTCCTCTTCTCTGAGAGAACCTGGTTCACGAGATCTTACTTCACTAAGTAATGAGGAAAAAGAGAAAATCATTCAAGAAATTCGTTGTTGTTTGCCCACATGGGTGACTCAAAGCCAAGTGTCAGAGCTGATCAGCATCTCAGGTAGCAATGTGGTTGAAGCTGTCTCTAATTTCTTTGAACGTGAAACTGAATTTCACGAGCAAGTGTTTTCTGATCAAACTTCTGCTTCTACATCCAAGTGTTTATCATCAAATGACAATGATTTGCTTTCAAAACCATCCATTGCTACTAGCAAAACTTGTGTAAGTGTCGACATTTTTCCAAGTCAAGACTCTAAGTTATCCACCCTGAGACATTCAGTATCAGGTAGCATTCCTCCTGCTAAAAGGAAGAGAAGTAGTGCAAGTAAGCCACATAAGAAAGCAAAAGTCCATGCAAAATCAGAATCAAGTGGGCCAAAGCAGTCAATGATAACAAATTTCTTCACCAAAGTATTGCCTGGGGTTACTCAACCTGGTAATTTAGGATCTAATTTTGATCAAATCCCTATCGTTGAAGACTTGCTGCTGTCTGATGTTGAAAAACTGTACAAGGATGAGATTGATCAGTTTATGCAGATAATAAATGGCAATGAATCATTAAAACAATGTGCTGTCTCTGTGCTTGAGAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGCAATCTTGATGAAAATAAAAAATCAGTTCAAGTTGAGTGCAACATGGACAACCCTCCCAAAAAGATATATGTGTCAAAGGAATTGAGAGATACAGCCGATATTTCTGCGCAGAGAGTGTCAAGAGAGAATGTAGATGCAACTCTTGTATCTCTACCACCAGAAAAATACAATCCTAATGAACATGCATGTTGGAGAGATGGAGAGCCTGCCCCATATTTACATCTTGCACGAACCTTTGACCTGCTTGAGGAGGAGAAAGGAAAGATAAAGGCTACTTTAATGTTATGCAATATGTTCAGAAGTTTGCTGGCCTTGTCTCCAGCAGATGTGCTTCCTGCTGTGTATCTGTGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTGGTTACTGCAGCGCTAGAAGAGACATGTGGAACTAATCGATTAAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGGCAAACACAGAGATTGCTTGCTCCACCAACACCACTTCTAATTAAGGATGTTTTCTTAGCACTCCAAAAGATAAGTGTACAAACAGGCAATGGAAGCACTTTTCGGAAGAAAAGCATCATTATAAATCTCATGCGTTCTTGCCGCGAAAAGGAGATAAAGTTTCTTGTTCGCACTTTGGTCAGGAATTTAAGGATTGGAGCAATGATTAGAACTGTTTTGCCTGCATTGGCTCAAGCTGTTGTTATGAATTCCTGCTCTACTTGGCACCAGGATAGAACTGCAGAAAATTTGAAGGAGAGGCTTCAGGGGCTTTCGGCAGCAATTGTTGAAGCATATAATATACTCCCTAATTTGGATCTTCTAGTACCATCTCTCATGAACGAAGGCATTAATTTTTCTGCTTCATGTCTGTCAATGGTTCCAGGAATACCTATTAAGCCTATGCTTGCAAAGATTACCAACGGCATTCCCCAAGTGCTGAAGTTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGCCAGCGAGCCCAGATTCACAAATTAGCTGAAGGGTCGATTCGTGTTTTTTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATCTGATTGACATAATTAAGGAATCCTGCAAGCCTGCTGCAGTGACTTTCATACTGGATGCAGAAATTGTTGGTATTGATAGGAAGAATGGATACAGGTTTATGGCTTTCCAGGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCTGTTACTACAGATAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGACATCATGTTTGCTAATGGGGAGCAGCTTTTGGGTTTTCCTCTCCGTTTAAGGCGAAAATATCTGAAGGATTTCTTCTATGATGAGAAACATGGCTATTTTGAATTTGCAAAGGAGACAACTATCGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAATTAAGATAAACTCATTCCTAGAAGATGCGATCCGTTCATCATGTGAAGGAATTATGGTGAAATCTTTAGATGTTGATGCTGGGTATTCTCCATCAAAGCGTACTGATACATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCTGAAACAGAGGAGTATCAAAGTGTATGCCGTGTAATGTCTGGGTTCTCAGATTCCTTTTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATCTTGTCCAAAAAGCCACCGTATTATCGAACAGCTGAGGCACCTGACAAGTGGTTTTGTCCGCTACTTGTTTGGGAAATAAGAGGAGCTGAGTTTACAGTATCCCCAGTTCACCATGCTGCCATTGGTTTGGCTCATCCATCTCGGGGCATCTCAATCAGATTCCCAAGATTTGTTCGCAGTGTGTCGGACAGGAAACCAGAAGAATGTAGCACAGCTGCTGACATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTGCCAACTGAAGATTGA 4218 0.4128 MAYQSSPMHRPQTLNSVQLFLAAHDSQHPSPLPPSLSLLAHHSSLPPLPSTFPQSKLIPKTRFVVDAFRYAGDFSVSYFLTHFHSDHYTGLNPNWSKGIIFCSNTTARLLVEVLKVPSKFVVPVPLCEPVEIDGCEITLIDANHCPGAVQFLFKIPGVDGNSERYLHTGDFRFSNAMTSEPLLASFVGADAVFLDTTYCHPKFQFPTQEESVAYVVDVVGRIGGEYDCSLRNVLFLIATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGFGESGEFTEDDSETNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKHNRFTVKSKDSFQIHLVPYSEHSNYGELREYVKFLKPKRVVPTVGVDGEKTDSKHANKMMKHFAGLVDETANKQEFLRGFHRASGDVDCKFEKDGSNVLKPGQNMETEVKLSDEEDNKIISSDFVLNLSSSLREPGSRDLTSLSNEEKEKIIQEIRCCLPTWVTQSQVSELISISGSNVVEAVSNFFERETEFHEQVFSDQTSASTSKCLSSNDNDLLSKPSIATSKTCVSVDIFPSQDSKLSTLRHSVSGSIPPAKRKRSSASKPHKKAKVHAKSESSGPKQSMITNFFTKVLPGVTQPGNLGSNFDQIPIVEDLLLSDVEKLYKDEIDQFMQIINGNESLKQCAVSVLEKTKGDVNKALDIYYCNSGNLDENKKSVQVECNMDNPPKKIYVSKELRDTADISAQRVSRENVDATLVSLPPEKYNPNEHACWRDGEPAPYLHLARTFDLLEEEKGKIKATLMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEETCGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFLALQKISVQTGNGSTFRKKSIIINLMRSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCSTWHQDRTAENLKERLQGLSAAIVEAYNILPNLDLLVPSLMNEGINFSASCLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLAEGSIRVFSRNGDETTSRFPDLIDIIKESCKPAAVTFILDAEIVGIDRKNGYRFMAFQELSSRGRGSKDASVTTDSIKVDICLFVFDIMFANGEQLLGFPLRLRRKYLKDFFYDEKHGYFEFAKETTIEADDACLTCEATLIKINSFLEDAIRSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGGWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKILSKKPPYYRTAEAPDKWFCPLLVWEIRGAEFTVSPVHHAAIGLAHPSRGISIRFPRFVRSVSDRKPEECSTAADIAEMFHSQTRKMDVPTED 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0167 1405 Gene3D - 58 380 IPR036866 -
Glsi12g0167 1405 FunFam DNA ligase 1051 1182 - -
Glsi12g0167 1405 SUPERFAMILY Nucleic acid-binding proteins 1251 1395 IPR012340 -
Glsi12g0167 1405 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1046 1054 IPR016059 GO:0003909
Glsi12g0167 1405 NCBIfam ATP-dependent DNA ligase 834 1392 IPR000977 GO:0003910|GO:0005524|GO:0071897
Glsi12g0167 1405 Pfam DNA repair metallo-beta-lactamase 278 383 IPR011084 -
Glsi12g0167 1405 CDD SNM1A-1C-like_MBL-fold 43 201 - -
Glsi12g0167 1405 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 291 1397 - -
Glsi12g0167 1405 FunFam DNA ligase 1247 1404 - -
Glsi12g0167 1405 Coils Coil 969 989 - -
Glsi12g0167 1405 Gene3D - 204 358 - -
Glsi12g0167 1405 CDD OBF_DNA_ligase_I 1251 1394 - -
Glsi12g0167 1405 Pfam ATP dependent DNA ligase domain 1022 1242 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Glsi12g0167 1405 Pfam DNA ligase N terminus 776 952 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Glsi12g0167 1405 Gene3D DNA ligase/mRNA capping enzyme 1051 1182 - -
Glsi12g0167 1405 Gene3D - 1032 1246 - -
Glsi12g0167 1405 ProSiteProfiles ATP-dependent DNA ligase family profile. 1133 1280 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Glsi12g0167 1405 CDD Adenylation_DNA_ligase_I_Euk 1013 1245 - -
Glsi12g0167 1405 FunFam DNA ligase 204 358 - -
Glsi12g0167 1405 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 381 IPR036866 -
Glsi12g0167 1405 MobiDBLite consensus disorder prediction 581 619 - -
Glsi12g0167 1405 Gene3D - 755 1024 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Glsi12g0167 1405 Gene3D - 1247 1403 IPR012340 -
Glsi12g0167 1405 Pfam ATP dependent DNA ligase C terminal region 1268 1376 IPR012309 GO:0003910|GO:0006281|GO:0006310
Glsi12g0167 1405 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 755 1005 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Glsi12g0167 1405 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 982 1244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0167 Glsi-ChrGlsi12 4454668 4514193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0167 753 1395 Core DNA Replication Machinery Family AT1G08130 38.854 4.77e-163 508