Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0148 ATGGCAAAAGCTGATGAAACTTCAAATTTGGATTTGAGCCGCCAGCATCTCCTTGATGACTTTTCCTCTACAGACTCATTCCTCGCCAATCTCCATTCAGTAAAACTCGAAGACCCGTTATCAGGATTTGATTTCAACGGACATGTTCCAAAAAGAAGTTTCTGTACTTTTCTTGGGGCCTCTGATTTTGAAGCAGACATGGAGTTCGTTGAAATCAGCTCTCCTAAGGTCCTAAACTCCATGTCAAACAGTTACTCAAAGGAAACCCAGAAACTCAATTTGCCCGGACCATTAATGGTGTCAGAGCAAAAGAAACCAGAACGTGATGAAGCAAGGCATTACAGAGGAGTTCGGAGACGGCCATGGGGGAAGTTTGCGGCGGAGATACGTGATCCAACCCGAAAAGGGACCCGAGTCTGGTTGGGTACATTTGACAGTGAAATTGATGCCGCCAAGGCATATGATTGTGCTGCCTTCAGGATGAGGGGTCAAAAAGCTATATTAAATTTTCCTTTGGAGGCAGGAGAATCTGATCCAAAGCCAAACCTTTGTGGCCGGAAAAGGACAAGACAGAGCACAAAGGACGAGCTGCCAGAAGCTTAA 603 0.4561 MAKADETSNLDLSRQHLLDDFSSTDSFLANLHSVKLEDPLSGFDFNGHVPKRSFCTFLGASDFEADMEFVEISSPKVLNSMSNSYSKETQKLNLPGPLMVSEQKKPERDEARHYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLEAGESDPKPNLCGRKRTRQSTKDELPEA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0148 200 MobiDBLite consensus disorder prediction 180 200 - -
Glsi12g0148 200 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Glsi12g0148 200 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
Glsi12g0148 200 PANTHER DNA-BINDING DOMAIN 87 180 IPR044808 GO:0003700|GO:0009873
Glsi12g0148 200 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Glsi12g0148 200 Gene3D AP2/ERF domain 112 173 IPR036955 GO:0003700|GO:0006355
Glsi12g0148 200 MobiDBLite consensus disorder prediction 172 200 - -
Glsi12g0148 200 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Glsi12g0148 200 FunFam Ethylene-responsive transcription factor 2 112 173 - -
Glsi12g0148 200 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Glsi12g0148 200 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Glsi12g0148 200 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0148 Glsi-ChrGlsi12 3864927 3865529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0148 1 197 AP2-EREBP Transcription Factor Family AT5G07580 43.415 3.14e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g0148 AP2 1.7e-14 CL0081