LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g0142	ATGGGGATTTGCTTCAGCATTGAAGAACAAAAGCATCCGTCTGGACATGAATCTGCTGCATCAACAACTAAGCAAGATCGAAGCACAAGCAATACTCCATTAGCTCCCATGAATATCAAGGATCTCCGCCTAAGTCCAGTCTACAATAATGTTGATATATTTACATATGAGGAGTTGACGCTAGCCACGAAGCACTTTCGTCCGGACTTAATTTTGGGAGAGGGTGGTTTTGGAGTTGTATATAAAGGAGTGGTAGATGCAACTGTGAGGCCAGGTTACAAGACCACTCAAGTTGCCATTAAAGAGCTAAATCGAGAAGGATTTCAAGGTGATAGGGAATGGCTGGCTGAAGTTAACTATTTAGGACAATTCAGTCACCCAAATCTTGTGAATCTCATTGGATACTGCTGTGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCATGTGGGAGTTTGGAAAAACATCTTTTTCGTAGAGTGGGCTCAACATTGACCTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTCGGTCTTGCAAAGGATGGACCTATGGGGGATCAAACCCATGTTTCAACACGAGTGATGGGCACATATGGATATGCTGCTCCTGAATATGTGATGACAGGGCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGAGTCGTGCTTCTTGAGATGCTTATTGGAAGGAAAGCATTAGACAAGAGCAGACCCAGCAGAGAACATAACTTGGTTGAGTGGGCACGCCCACTGTTGAATCATAATAAAAAGCTCCTGAAAATCTTAGACCCTAGAATGGAAGGGCAATATTCCACTAGAACTGCAGTAAAGGTAGCGCATTTGGCATACCAATGCCTTAGTCAAAATCCAAAAGGCAGGCCTTTGATGAGTCAGGTGGTTGAAATTCTTGAAAATTTTCAGTCAAAGGAAAAAATTGAGGAAGAGCAAATGCTGATTGGCGGTAGTAGTATAACCATCTATGAGGTCCCAAAGGGCGCAAGTGGCACTCCAACGGAGGGTAAAAGGCAAATTAAAGATGATGAAGTTTATAGCAGCAAAGGAAGAAGAGAAAAAAGCAGGAGTGAGCCTTCAAATGATTGTGATTTATGTAGTCTTCCACCAGATTTATTGCCGCAACAGAAATCAGCTTCTTCTAGACGTTGA	1284	0.4245	MGICFSIEEQKHPSGHESAASTTKQDRSTSNTPLAPMNIKDLRLSPVYNNVDIFTYEELTLATKHFRPDLILGEGGFGVVYKGVVDATVRPGYKTTQVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVNLIGYCCEDEHRLLVYEYMACGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRKALDKSRPSREHNLVEWARPLLNHNKKLLKILDPRMEGQYSTRTAVKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKEKIEEEQMLIGGSSITIYEVPKGASGTPTEGKRQIKDDEVYSSKGRREKSRSEPSNDCDLCSLPPDLLPQQKSASSRR	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g0142	427	Gene3D	Phosphorylase Kinase; domain 1	43	148	-	-
	Glsi12g0142	427	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Glsi12g0142	427	CDD	STKc_IRAK	72	346	-	-
	Glsi12g0142	427	MobiDBLite	consensus disorder prediction	380	404	-	-
	Glsi12g0142	427	MobiDBLite	consensus disorder prediction	9	35	-	-
	Glsi12g0142	427	Gene3D	Transferase(Phosphotransferase) domain 1	149	364	-	-
	Glsi12g0142	427	ProSiteProfiles	Protein kinase domain profile.	66	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0142	427	FunFam	Probable serine/threonine-protein kinase PBL8	149	361	-	-
	Glsi12g0142	427	Pfam	Protein tyrosine and serine/threonine kinase	71	343	IPR001245	GO:0004672\|GO:0006468
	Glsi12g0142	427	SUPERFAMILY	Protein kinase-like (PK-like)	45	344	IPR011009	-
	Glsi12g0142	427	MobiDBLite	consensus disorder prediction	369	427	-	-
	Glsi12g0142	427	FunFam	Serine/threonine-protein kinase BIK1	35	148	-	-
	Glsi12g0142	427	ProSitePatterns	Protein kinases ATP-binding region signature.	72	101	IPR017441	GO:0005524
	Glsi12g0142	427	MobiDBLite	consensus disorder prediction	16	35	-	-
	Glsi12g0142	427	PANTHER	OS01G0588500 PROTEIN-RELATED	26	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g0142	Glsi-ChrGlsi12	3638680	3646019	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g0142	47	343	Glycoside Hydrolase	AT3G07070	50.993	2.56e-101	306

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi12g0142		PK_Tyr_Ser-Thr	2e-47	CL0016