Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0130 ATGCATCTGCGGGAGTCTCCGCTGGAGAAAATGAGGGGTATTCTGGATCACGACTTATACTCAATAATGGGCGTCGAAAACTACCACGTAATCGAGCTCGTCGGTGAAGGATCGTTTGGGAAGGTGTACAAGGGGAGGCGGAAGTATACAGGACAGACTGTTGCAATGAAATTTATAATGAAGCATGGCAAAAGCGAGAAGGATATTCATAATTTACGACAAGAAATTGAGATCTTACGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGACTCCTTTGAAAGTCCGCAAGAGTTTTGTGTTGTCACAGAATTTGCACAAGGTGAACTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCTGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTGAGAGCATTACATTACTTGCATTCCAACCGTATCATCCATCGTGATATGAAGCCACAGAATATTCTTATTGGTGCCGGATCTGTTGTCAAGCTCTGTGATTTTGGGTTTGCACGCGCAATGTCCACAAATACTGTTGTTTTGCGATCCATAAAAGGCACTCCATTGTACATGGCTCCGGAACTTGTACGGGAACAACCTTACAACCACACTGTGGATTTATGGTCTCTTGGCGTTATATTGTATGAGTTATTTGTTGGCCAACCTCCATTTTACACAAATTCTGTTTATGCTCTCATCAGACATATTGTTAAGGACCCAGTTAAATATCCAGATAGCATGAGTCTGCAGTTCAAAAGCTTTTTGAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTGACTTGGCCTGCTCTTCTTGAGCACCCATTTGTTAAAGAAGCTTCAGATGAACTGGAGGCCAGGGAAATGCGTGAGATATCTGGTTCTCCCTGGGGCTGTGATGCAGCAGGGAGGGGTGAAGGAAAAACCATTCAACCTTCAACAGGTTCTGCTGCTTCTAATTCTGCAGCTTTTGTGGAGAATATGACTTTACCCCTTAAGAGTGAAGCTCAGTCAAATTGTCCCAAGTTGGATAAAGACAATTCTTCAGGACAAGATGCGTCCCCGGGATTTTCAAGTCAAAATTATGTCAAAGAACCTGGCTGCCAGAGATTGGAGAGACTGGAAAATAACTCTCGGACAGTCAAAGGTGCAAAGATAATTGGTCAAGATAATGAAGCATTGGGACATATTCTGCTTCCACTGAAAAGATGGTCCAAAGGATCTCAAAACAACTGCAGTGATCAAGATATTCTTGATTCAAACCAGTCGTTGAGAATTCTTTTAAACCTAGTTGCAGCAGGTGCCCTCAATTCTAGTGGACGACTAGATGAATTAATAAGTGAGCTTCTTGCATTTAGTGGAACTGTTATAGGCACGAAATCCTCTGAAGTTAATGACTTGATAGCAAAGAGTTTCTCCATCACTAAAATGTTGTTAGATAATAATGGGAGTTGCACCACAAGCTCTTATTTCAGGCACTGGGTTGCAGTTGTTGAAATTTATTCTCAGGTTGTAACTTCCACTAATGATGCATCTGGTAGAGTTCTCTATGAGTCTAGTGCCTGCATTACAATCGTCCTGTCTAGAGTTTCTCAGTTGCTTAGATCAGCTTCTCAAACTTCAGAGACACAGAATGAAACAATTAAAAAAATTTTGGATCATGCTAAAACATCTGGTTTAGTGGACCATTTGTGTCTCTGTTTAGCAACTTCAGGGTCAAGTCTTATTTCAGGATCTTCTAATTTGCTACGGGCTGCTTCTGAAGCATGGAGAGCTATCTGGTCTCTGGTAAACGCATTGGATATTCTTTTCATGAAAACAAATGCCATTTTATTTCCCATAAATGCTTTGCGGAGTCATTCTTTTTATCGGCTGGAAATTGTGGACCGTGAGCAAGGCCCATTGGTTGGTGCAGAATCAGCAAAAATTGTTGATGCAGTGACAAGAGCATTCCTGAAATCCAAAGCTATTCAGGTTGCAGTTTACTATTGTTTTCACCAACGTCTTGAGGCATCGATGTGTTCCTGTCTTCAGCTGTTTTCAAGGTGCTGCCTACATAGTGGAGCTGTTCCAGCACTCCTTTGTGGTCTTCCCATTTCGCTTCCTGCAACTACTGTTGTTAGCGGTGGCGGTGATGGTACGATAGTTTCAGAGATTTTTTCTGTATTGTCGTTATGCACTTGCTCTCTAAATAAAGATACACAAAGTGGAGAACCAGGTAACTTGAAATGCAAAATTGCCAATCCTTCTGCTCTGGTTCTTTTTTCGTGCCTCATTCTTGCAGTAATTGCACAATGTTTGAAGTCATCTGGAAGAAATTCAGCACTGTTTATGCTCACAAACTCACCAAAGAAACAGCTTGCTCGACTTTCAGTGCTTGCCCATTATATTTCTTCTGATGATAGGAAAAAAACTTTCCAACCTCAAAGTGCATCAGCTATGCTGGCTTTAGCGTCCATTCTGTCCCTCGAATCTGGGGCTTCTATTGAGTCTTCAATATCTGAAATTGCCATGCCTTTAATTCCTCGAACATCTGCACTATGTGATTATCTTAAATTTCCATCTGGCGACAAAAATGAATTGGATCATTCCAACTATAGTGGGAAGCTCTCATATTGGCATGGACTAAGGGATGGTTGTGTTGGTCTTTTAGATTCCAGACTGAAGTGGGGAGGACCGTTAGCTGTTCAACAGTTGTGTGCTAGTGGTGTCCCTCTTCTTCTTATTGGCTTATTAGGTATTGATGCTTCAAATGCTTCTCGTGGATTTGAGTGCACAACTGATACAATTGGATTATCCCCCATTGGTGTTGTATGGATAATTTCGTCAATATTTCAATGCCTTTCGGGTGGCGCTTTGACTTTTCGTCAGATTTTGATTAGGAATGAACATATCAAGCTTATATCTGACTTAATATGTGACACTCATCTGAAGTTGATAAACTGCTGGGTCGGACCTGGTGGAGGGAGGGCAGGAATCAGAGATCTAATAAATGTAGTAGTAGATCTCTTAGCGTTTCCTTTTGTTGCTCTACAAAATGTGCCTGGCTTGCCTTTAGCCGCTGCTTCTGTTAACAGTGGGTTTCTTCTCAACATGGGATCTCCTTGTCATAGAGTATGCTTGGAAGACAAGGATATAGTTAAAGCAATAGAAGATGACATGGGAAAATACATTAAGATCCTTTTGGAGGTGGGGGTGCCTGGTATTATCCTTCGATGCTTAGATCATATGGAGTTGAATGAGTTGGGCAGGCCTGTTGCCTTTCTTGCTAAAATGGTAGGCCACCGACCTTTGGCATTTCAACTTGTGAGTAATGGTCTTTTAGATCCCAATAGGATGAGAAGGTTGTTTGATTGTTCAGTCCCAAAAGAGGTCACATTGGATACTCTGATGATAGTTTCTGATCTAGCTCGCATGGACAAGGGATTCTATGAGAGCATTAAAAGTGCTTCTATTTTGGAGTTCTTAAAAGCTTTTCTTTCACATGAGGACCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCACAGTGCCTACTTTTATAGTTCACTTGCAAGACATCACATTGTTAGTATCCTTATTGATCGGTGTGCTGATCCAGACAAACGAACAAGAAAGTTTGCTTGCTTTGCTATTGGAAATGCGGCCTACCACAATGATATGCTATATGAAGAGCTGAGGAGATCCATTCCTCAGTTGGCAAATTTGCTGTTGATGGCAGAAGAGGACAAGACTAAAGCAAATGCGGCAGGTGCACTTAGCAATCTGGTTCGAAACTCTGACAATCTTTGTGAAGACATTGTGTCCAAAGGGGCGATTCAGGCTCTCCTGAAGTTAATTTCGGATTGTTCAGTAATAGCGTTGAATCCAAGTAGAAATGATTCAGCGAGTGAGTCTCCTTTAAAGATAGCTCTCTTTTCCTTGGCAAAGATGTGTGCACACCCACCCTGCAGACAGTTCCTTCGTTCATCAGCCTTGTTTCCTGTTGTTGCACGACTTCAGCAATCCCCAGAATCATCAATTGCCAAATATGCCTCTGTAATTATTAGCAAAGTTGCTGAAGCTTGA 4086 0.417 MHLRESPLEKMRGILDHDLYSIMGVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMSLQFKSFLKGLLNKAPESRLTWPALLEHPFVKEASDELEAREMREISGSPWGCDAAGRGEGKTIQPSTGSAASNSAAFVENMTLPLKSEAQSNCPKLDKDNSSGQDASPGFSSQNYVKEPGCQRLERLENNSRTVKGAKIIGQDNEALGHILLPLKRWSKGSQNNCSDQDILDSNQSLRILLNLVAAGALNSSGRLDELISELLAFSGTVIGTKSSEVNDLIAKSFSITKMLLDNNGSCTTSSYFRHWVAVVEIYSQVVTSTNDASGRVLYESSACITIVLSRVSQLLRSASQTSETQNETIKKILDHAKTSGLVDHLCLCLATSGSSLISGSSNLLRAASEAWRAIWSLVNALDILFMKTNAILFPINALRSHSFYRLEIVDREQGPLVGAESAKIVDAVTRAFLKSKAIQVAVYYCFHQRLEASMCSCLQLFSRCCLHSGAVPALLCGLPISLPATTVVSGGGDGTIVSEIFSVLSLCTCSLNKDTQSGEPGNLKCKIANPSALVLFSCLILAVIAQCLKSSGRNSALFMLTNSPKKQLARLSVLAHYISSDDRKKTFQPQSASAMLALASILSLESGASIESSISEIAMPLIPRTSALCDYLKFPSGDKNELDHSNYSGKLSYWHGLRDGCVGLLDSRLKWGGPLAVQQLCASGVPLLLIGLLGIDASNASRGFECTTDTIGLSPIGVVWIISSIFQCLSGGALTFRQILIRNEHIKLISDLICDTHLKLINCWVGPGGGRAGIRDLINVVVDLLAFPFVALQNVPGLPLAAASVNSGFLLNMGSPCHRVCLEDKDIVKAIEDDMGKYIKILLEVGVPGIILRCLDHMELNELGRPVAFLAKMVGHRPLAFQLVSNGLLDPNRMRRLFDCSVPKEVTLDTLMIVSDLARMDKGFYESIKSASILEFLKAFLSHEDPNMRAKACSALGNMCRHSAYFYSSLARHHIVSILIDRCADPDKRTRKFACFAIGNAAYHNDMLYEELRRSIPQLANLLLMAEEDKTKANAAGALSNLVRNSDNLCEDIVSKGAIQALLKLISDCSVIALNPSRNDSASESPLKIALFSLAKMCAHPPCRQFLRSSALFPVVARLQQSPESSIAKYASVIISKVAEA 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0130 1361 SMART arm_5 1141 1181 IPR000225 GO:0005515
Glsi12g0130 1361 SMART arm_5 1265 1319 IPR000225 GO:0005515
Glsi12g0130 1361 SMART arm_5 1225 1264 IPR000225 GO:0005515
Glsi12g0130 1361 CDD STKc_STK36 26 278 - -
Glsi12g0130 1361 MobiDBLite consensus disorder prediction 338 364 - -
Glsi12g0130 1361 PANTHER PROTEIN KINASE RELATED 23 1358 - -
Glsi12g0130 1361 SMART serkin_6 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0130 1361 Gene3D - 1095 1358 IPR011989 -
Glsi12g0130 1361 FunFam Serine/threonine-protein kinase 36 25 340 - -
Glsi12g0130 1361 Pfam Protein kinase domain 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0130 1361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Glsi12g0130 1361 ProSiteProfiles Protein kinase domain profile. 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0130 1361 Gene3D Transferase(Phosphotransferase) domain 1 22 303 - -
Glsi12g0130 1361 SUPERFAMILY ARM repeat 1048 1359 IPR016024 -
Glsi12g0130 1361 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Glsi12g0130 1361 FunFam Aurora kinase A 22 110 - -
Glsi12g0130 1361 FunFam Serine/threonine-protein kinase TIO 1088 1357 - -
Glsi12g0130 1361 MobiDBLite consensus disorder prediction 296 319 - -
Glsi12g0130 1361 SUPERFAMILY Protein kinase-like (PK-like) 25 286 IPR011009 -
Glsi12g0130 1361 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0130 Glsi-ChrGlsi12 3156671 3193992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0130 22 291 AGC Kinase Gene Family AT3G08720 37.410 2.13e-47 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Glsi12g0130 Pkinase 1.1e-77 CL0016