Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0110 ATGATAAACTATATAGTTGAGTTGCCGCCAGAGAAGGAGGGTGATTCATATGGTTATGCTTTATTGGCTAGGACACATGATCAATCTGATGTTGACATGGTTGCTGAAATTCAAAACATAAGTCTCAAGAGGCAGGGGACGTTCCAGGAAACTGAAATGCAAAATAGCCCTTTAAAAAGTTCCTGTCGAAGGTTAGGAGGGTCTAAGCAATTTACATCTCTTGATGGTCTTTCGGGTTTGTTAGCATTATGGTGGGCTGATGGTGTGGATCTAGAAGGACTACATTGCTCAAAAAAATTGATTCGTGTTCAAATCAGAAATGGCTTACTGAACTTTGCTGGCTCATGGGTTCCTTCTATTCCTGCTTTTAAGCTGAAGCCCAAGCCTTTATTTGCTACTTGTGACACTATGAAGGTTGCTGAACTTATCCAAAATGTTGATAGATATGAAATTTCCAGGTTTGATCTTCAGTGTGATAAGGTGTTCAATTTGGAGTTAGCACTTGATTCTAAATTAAAGTCTTTGGTGGCCACCATATCCTGGTTTATCTGGAAGGGAAGGTGTCTCCAGATGAGGGATGGAGTTAAAGACAGTGAGAGAGAAAAGAGAAGGAGGAGCGATGGTGGTGGGGTGCGACAGATAGTCATGAAGAGGGAAAGAGAGGTGGACAGCATAGCCATGGCCAACTGTTTGATGTTGCTTTCTGGCGGGGGAGGATTTGAGGCTGCCTACTCTAACTCCTCTAGCAGCCGTGTCTTCGAGTGCAAGACTTGTAACCGGCAGTTCCCGTCGTTTCAGGCACTTGGTGGCCACCGTGCGAGTCACAAGAAGCCGAGGATGATGGGAGGAGATGGGGAGATTAATAATGATGGCCAGTTGCTTCTTGGTTCTTCACCAGCTAAGCCTAAAACGCATGAGTGCTCCATTTGTGGATTGGAGTTTGCAATCGGGCAGGCTTTGGGTGGCCACATGAGGAGGCACAGAGCAGCATCTAATTTGAATGAAAGCATGCAAACTTCTATGACTATGAGCAGCAGTAGTGGTAGCAGTCTTGAGTCTTCTGCTGCAAAGAAGAAGGTGGTTAACAGCCATAAACTTTTGTTTTTGGATTTGAACTTGCCACCCGTGGAGAATAATCTGGAGTTTCTAAGGATTGGCAAGGAAACTTCTTTGGTTGATTGCTTATATTGA 1191 0.4433 MINYIVELPPEKEGDSYGYALLARTHDQSDVDMVAEIQNISLKRQGTFQETEMQNSPLKSSCRRLGGSKQFTSLDGLSGLLALWWADGVDLEGLHCSKKLIRVQIRNGLLNFAGSWVPSIPAFKLKPKPLFATCDTMKVAELIQNVDRYEISRFDLQCDKVFNLELALDSKLKSLVATISWFIWKGRCLQMRDGVKDSEREKRRRSDGGGVRQIVMKREREVDSIAMANCLMLLSGGGGFEAAYSNSSSSRVFECKTCNRQFPSFQALGGHRASHKKPRMMGGDGEINNDGQLLLGSSPAKPKTHECSICGLEFAIGQALGGHMRRHRAASNLNESMQTSMTMSSSSGSSLESSAAKKKVVNSHKLLFLDLNLPPVENNLEFLRIGKETSLVDCLY 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0110 396 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Glsi12g0110 396 PANTHER ZINC FINGER PROTEIN ZAT5 217 378 - -
Glsi12g0110 396 Pfam C2H2-type zinc finger 305 329 - -
Glsi12g0110 396 Pfam C2H2-type zinc finger 252 278 - -
Glsi12g0110 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 332 IPR013087 -
Glsi12g0110 396 SUPERFAMILY beta-beta-alpha zinc fingers 251 327 IPR036236 -
Glsi12g0110 396 SMART c2h2final6 253 275 IPR013087 -
Glsi12g0110 396 SMART c2h2final6 305 327 IPR013087 -
Glsi12g0110 396 Gene3D Classic Zinc Finger 251 327 - -
Glsi12g0110 396 ProSitePatterns Zinc finger C2H2 type domain signature. 307 327 IPR013087 -
Glsi12g0110 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0110 Glsi-ChrGlsi12 2516664 2524076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0110 216 383 C2H2 Transcription Factor Family AT2G37430 40.113 2.60e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g0110 zf-C2H2_6 2.6e-09 CL0361