Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0090 ATGGGGTTGAAATTTACAAAGGAGGGGCCACCCAAATTTGACAACCTGAGTTTACATCACCACATGATCAATTACCTTGCCAAAAATTTGTATATTCGAAACTTGGTATCTAAGCAACGGAGGAGAATGCTCATTGCTGGCTATGATCTTGACATGTCATATATCACAGATCGATTACTAGCAATGTCATTTCCAGCAGAACGGATGCGAGCAGTGTATAGAAATCCTCTCTGGCAGGTCAAATCTGTGCTGGACATGAGACATCATGAGCATTATAAGATATATAATCTCTGTATAGAAGAAAATTATGATACAGCACACTTTTATGGTCGTGTGGAAGAATATCCTTTTGATGACAACCATGTACCATATCTTGAAATGATCAAGACCTTCTGTGAAAGTGTGCACTCATGGCTTTCCAGCGACCCAAAAAATATTGCCGTCATTCATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTTTGTGCGTACCTAGTTTACAGTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGACGTACAACGAATAATGAAGGAGTATCAATACCGAGCCAACGGCGTTACGTAGGGTACTGGGAAAGTGTTCTTTCCATTCCTAGGGGCTTCGGTATTGGACCAGCAACTGTGAACTTGCCTCAACCATGTAGCAGAGAATTGCGGCGAATCCGCCTCTATGATACAGTTAACATTGACACAATCTTCTTTGTGATCTCAGAGCTGCAGGAGGTTCCTAATCAGCGCTACCGTCCATCAGTGGAGATTACCAGGAGTAGCTGCAGACAGATTAAGAAAGGGTATCAGCGAAACACCAGTCCTCGCTATTACATCTCTTATATCGAAGGTGATGAAGATGGAAAAAAATCAGAATTAGAAGAACCGCATGTTGTAGTCCAAATGGACACTGAGGATCCTGCAATCTACCAAAAGTCTTGTCTGGACCATTATTTTGACAAACCTATTCAAGTTACTGGAGATGTTCGTGTCACATTCTACCAGAAAATGATAGGAGGGCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAACGGCTTGCTACAGCTCAAAACACGGGACTTGGACAAATTTGGGAATAAAGGAAGATCAATATGTGGCCCAGCCTTCTGCTTAGAAATTCTGTTTGGCCCTGCCAATACAAAACATTCGCAAACTCCATCCTGTAGTGAGAATTCTGAAGATGATATTGAGACGATTATAATGCATAAGCTTTCCAGTTTTCTTATTGTCACTTTCTGGCTTTCTTCCTTGTCATATGAGGAGCAAGGAAGCACCGGTAGCACTGGTAGCTTATCTTTCTGTATTAGGAGCAAACTCAAACACCAGCACAAAATTGATTTCAGAAGGTTAATTTAA 1410 0.4156 MGLKFTKEGPPKFDNLSLHHHMINYLAKNLYIRNLVSKQRRRMLIAGYDLDMSYITDRLLAMSFPAERMRAVYRNPLWQVKSVLDMRHHEHYKIYNLCIEENYDTAHFYGRVEEYPFDDNHVPYLEMIKTFCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLVYSGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESVLSIPRGFGIGPATVNLPQPCSRELRRIRLYDTVNIDTIFFVISELQEVPNQRYRPSVEITRSSCRQIKKGYQRNTSPRYYISYIEGDEDGKKSELEEPHVVVQMDTEDPAIYQKSCLDHYFDKPIQVTGDVRVTFYQKMIGGRLFYCCFNTAFIKNGLLQLKTRDLDKFGNKGRSICGPAFCLEILFGPANTKHSQTPSCSENSEDDIETIIMHKLSSFLIVTFWLSSLSYEEQGSTGSTGSLSFCIRSKLKHQHKIDFRRLI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0090 469 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Glsi12g0090 469 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Glsi12g0090 469 Pfam Dual specificity phosphatase, catalytic domain 114 187 IPR000340 GO:0008138|GO:0016311
Glsi12g0090 469 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Glsi12g0090 469 SMART PTEN_C2_2 223 395 IPR014020 -
Glsi12g0090 469 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 395 IPR035892 -
Glsi12g0090 469 Gene3D Protein tyrosine phosphatase superfamily 27 209 IPR029021 -
Glsi12g0090 469 Gene3D - 261 398 - -
Glsi12g0090 469 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 31 411 - -
Glsi12g0090 469 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Glsi12g0090 469 Pfam C2 domain of PTEN tumour-suppressor protein 313 393 IPR014020 -
Glsi12g0090 469 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Glsi12g0090 469 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Glsi12g0090 469 ProSiteProfiles C2 tensin-type domain profile. 241 396 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0090 Glsi-ChrGlsi12 2135685 2140665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0090 1 402 Protein tyrosine phosphatase (PTP) family AT5G39400 67.726 0.0 580