Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0079 ATGGCAGCCAAGAACGGCGAATCCGTCACGGCAACGCCGCCGCGTCCGACGATCACTCTTCCGCCGCGACCTTCCATGGAGGCCTTCTTCACTGGTGGACCCGGTGCAAGCCCTGGTCCGATGACTCTCGTGTCTAGCTTCTTCTCCGACAACTACCCTGACTCCGATTGCAGGTCTTTCTCTCAATTGCTAGCTGGAGCTATGGCGTCTCCGCTCGCTCTCGGTGCGAGGCCTAGCTTCTTTGCGGACAATTCCACCGACAATTCCTCTAAAGAAGCGGCTCATGAGGATGGAGGCCAGAAGAATTTGGGGTTCAAGCAGAGTAGACCCATGAATTTGGTGATTGCTCGTTCCCCATTGTTTACAATTCCACCAGGGTTAAGTCCTTCTGGGTTGCTTAACTCGCCGGGCTTCTTTTCGCCGCAGAGCCCCTTTGGGATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCACATATGCACATGCAAGCTGATTTTCAGCAATCTGCTGTAACAGCTCCCGCTGAACCTTCTGCAGTGCTGCCATCCTGTAATCCAAGTGAAGCTTCAGCTTCAGCACAGCAAGCCACACTGTCTGTATCAGATCCTAAAAGTGCCCAGCTTGAAAGATCAGAGATTTCTCATGCTGATAAGAAGTATCAACCTCCTTCCCTGGCCATTGACAAGCCTGCTGATGATGGCTATAATTGGCGTAAGTATGGGCAAAAGCAGGTTAAGGGAAGTGAGTATCCCCGGAGCTACTACAAGTGTACACATCTGAATTGCCCTGTAAAGAAAAAGGTTGAGCGTGCCCCTGATGGTCAAATAACTGAAATTATCTATAAAGGTCAGCATAACCATGAATTGCCTCAGACAAACAGGCGTATTAAAGATAATTGTGATTCAAATGGAAATATGAGCAGTCAAGCTAAGTCTGAGTCAAACACACAAGATTGGGTTGGAAATTTAAATATGTTTGGTGAATGCATACCTGATCATTCAATGCCTGAGAGTGACCAGACCTCCAATCAAGGAGTTCCCAGACAATTACCTGGATCAAATGAGATTGAGGAAGCAATTGATGCAGATGTTACAGAAGACGGAGTTGACGGTGAGCCAAACCCAAAAAGAAGGAACACTGATGTTGGAGCTTCTGATGTATCTTTGTCCCACAAGACTGTTGCAGAACCCAAAATAATTGTGCAAACAAGAAGTGAAGTTGATCTGTTGGATGATGGCTACAGGTGGCGCAAGTATGGGCAGAAAGTGGTAAAGGGAAATCCTCATCCAAGGAGTTATTACAAATGCACTAGTGCAGGATGCAATGTGCGTAAGCACGTTGAGAGAGCTTCAACAGACCCCAAAGCTGTTATAACGACCTATGAGGGAAAACATAACCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACCGCTACTAGCAATTTAATGCCACTAAAACCACATAAAGTGGTGCCTGAAAAGCATTCTTTGCTTAAAAATACGGATTTTGGAAATAATGACCAAAAACCTGTTGTTTTACGCTTAAAAGAAGAGCAAAACATAGTATAA 1596 0.463 MAAKNGESVTATPPRPTITLPPRPSMEAFFTGGPGASPGPMTLVSSFFSDNYPDSDCRSFSQLLAGAMASPLALGARPSFFADNSTDNSSKEAAHEDGGQKNLGFKQSRPMNLVIARSPLFTIPPGLSPSGLLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADFQQSAVTAPAEPSAVLPSCNPSEASASAQQATLSVSDPKSAQLERSEISHADKKYQPPSLAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGQITEIIYKGQHNHELPQTNRRIKDNCDSNGNMSSQAKSESNTQDWVGNLNMFGECIPDHSMPESDQTSNQGVPRQLPGSNEIEEAIDADVTEDGVDGEPNPKRRNTDVGASDVSLSHKTVAEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTATSNLMPLKPHKVVPEKHSLLKNTDFGNNDQKPVVLRLKEEQNIV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0079 531 ProSiteProfiles WRKY domain profile. 412 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 SUPERFAMILY WRKY DNA-binding domain 409 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 ProSiteProfiles WRKY domain profile. 233 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 Gene3D WRKY domain 231 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 Gene3D WRKY domain 402 478 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 MobiDBLite consensus disorder prediction 1 34 - -
Glsi12g0079 531 FunFam WRKY transcription factor 226 298 - -
Glsi12g0079 531 MobiDBLite consensus disorder prediction 190 214 - -
Glsi12g0079 531 MobiDBLite consensus disorder prediction 342 357 - -
Glsi12g0079 531 SUPERFAMILY WRKY DNA-binding domain 237 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 MobiDBLite consensus disorder prediction 337 393 - -
Glsi12g0079 531 SMART WRKY_cls 417 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 SMART WRKY_cls 238 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 MobiDBLite consensus disorder prediction 473 492 - -
Glsi12g0079 531 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 Pfam WRKY DNA -binding domain 418 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g0079 531 MobiDBLite consensus disorder prediction 184 238 - -
Glsi12g0079 531 MobiDBLite consensus disorder prediction 83 106 - -
Glsi12g0079 531 FunFam WRKY transcription factor 33 404 470 - -
Glsi12g0079 531 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 135 492 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0079 Glsi-ChrGlsi12 1960412 1966079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0079 15 528 WRKY Transcription Factor Family AT2G03340 52.830 6.28e-151 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi12g0079 WRKY 1.1e-25 CL0274