Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0077 ATGGGTTGCATTAACTCCAAGAAGGCGATTGCCAGAGCTTCACCAGCACATGTGCAGTCGGCGGCGACAACCGGTAATGGGTCGGCGATGGTGGAGCCTCCGTCCAGAGTACAATCTGGGGTGCTGATTTTTGAGAACAAAGGGGAAGCGACGTCAGAGGATCGGAGCCGGGATGGGAAGAGGTCCAAGAATGAGATTTCCAAAGGAAATGGATCTTTCAGTTTTAGGCTGGGGTTTTCGCATAGGTTTGTGGAAGCGGAGCAGAATGCGGCCGGATGGCCCCCTTGGCTCACCTCTGCTGCAGGGGAAGCTATTCAAGGATGGGTGCCCCTGAGAGCAGATTCTTTTGAGAAATTAGACAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGTGCACGTGAGGTTGAAACCGGGAGGATGGTTGCCCTGAAGAAAGTGCACTTTGACAATTTTCAACCTGAGAGCATTAAATTCATGGCAAGAGAAATAACAATTCTCCGCAGACTTGACCACCCAAACATCATGAAATTAGAGGGTCTAATTACATCCCGACTATCGAGTAGCATTTACCTTGTATTTGAATACATGGAGCATGATCTTGCAGGCTTAGTATCTTGTCCTGACATCAAGTTCAGTGATACACAGGTTAAATGTTACATGAGGCAGCTATTAAGTGGACTTGAGCACTGTCATCTCCATGGTATCATGCATCGTGACATTAAAGCATCCAATATATTACTGAATAATGAGGGTATTCTCAAGATTGGAGATTTTGGATTAGCAAATACCCTTAGCCCCAATAACAGGCATCCACTGACCAGTCGTGTAGTGACACTATGGTATCGCCCTCCTGAACTCTTGATGGGATCAACAAATTATGGAGTATCAGTGGATCTTTGGAGTGTGGGTTGTGTATTTGCGGAACTTTTTCTGGGAAGGCCTATCCTTAAGGGGAGAACTGAGGTCGAACAATTACACAAAATCTTTAAGCTTTGTGGTTCTCCTCCTGACGAGTTCTGGAAAAGTTCTAAGCTTCCTCATGCAACAATGTTTATACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTAAAGATTTTCCAGTAACTGCTGTAAACCTAATTGAGACTCTACTTTCAATTGACCCTTTTAAGCGTGGGACAGCCTCCTCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCGTATGCTTGTGATCCATCAATCCTTCCAAAGTATCCACCTAACAAAGAAATGGATGCCAAAAATAGGGAAGATGTACGCAGGAAAAAGAGTGGAGGCAAAGTGCGAGAGGCTGCAACATTAAGAAAGAAAAAACGAGTTCGTAAAATTTTACAAGAACCAACCAATTTCAGTAAAGCAGTTTCAAAAGAGGAAGTACAGAACATCTCTCATAATGCTCATAGAGATGATGGTAAAGCACATCTTCCCAAGGGAAAAGGAGGAGCTATGCACAGAGAAGCATTGAAGCCATCATTAAATGCAATGACGGAGACTTCCCAGACAATAAATGTTCCTCATGGCTATAGTGTATTCTCAGGACCAGTGCCAGTCTCTGGATCTAGTGGCTTTACATGGGCAAAAAATAGAAAATTAGATGTTTCATCAACATTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTAGATCCATCCTTTGCAAAAGGCACCTATGATTTAACCAAACGAGGGGCAGATGTTTCAGAAAGAAAATATAATGATAACGCAGGCCATCAGGATGAGACTGTCAAGCATTGGCTACCAAATCACCAGGCTCAATATGGTCGAACAGAATCTTTTGATGCAGCTGATATATTGCATTATACAAATGGATCTATGGATTTTGATCCCTCAGACCAAATAGATGTTCTGATAAACATTCAGGGCTATAGAAAGCAAGGCGAGCTTGCTGAATTATCAGGACCACTGATATCTCGATCAACTAAAGTCGACGAGTTGTTGCAGAGGAATGAAAATGGTATTTCTCGACCAGCTCGGAAGTCAAGGCTTGGAAGAGGTAAAGAAACTTTTTTGTTAGGTAGCTTGACAAATGAAGCAAGGATTCTTGAACTGGAGTCATCGTCACCGTCCGGGGTGCTCCGCTAA 2133 0.4351 MGCINSKKAIARASPAHVQSAATTGNGSAMVEPPSRVQSGVLIFENKGEATSEDRSRDGKRSKNEISKGNGSFSFRLGFSHRFVEAEQNAAGWPPWLTSAAGEAIQGWVPLRADSFEKLDKIGQGTYSSVFRAREVETGRMVALKKVHFDNFQPESIKFMAREITILRRLDHPNIMKLEGLITSRLSSSIYLVFEYMEHDLAGLVSCPDIKFSDTQVKCYMRQLLSGLEHCHLHGIMHRDIKASNILLNNEGILKIGDFGLANTLSPNNRHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGRPILKGRTEVEQLHKIFKLCGSPPDEFWKSSKLPHATMFIPQTNYESSLRERCKDFPVTAVNLIETLLSIDPFKRGTASSALMSEYFSTKPYACDPSILPKYPPNKEMDAKNREDVRRKKSGGKVREAATLRKKKRVRKILQEPTNFSKAVSKEEVQNISHNAHRDDGKAHLPKGKGGAMHREALKPSLNAMTETSQTINVPHGYSVFSGPVPVSGSSGFTWAKNRKLDVSSTLSDGSRSKISALDPSFAKGTYDLTKRGADVSERKYNDNAGHQDETVKHWLPNHQAQYGRTESFDAADILHYTNGSMDFDPSDQIDVLINIQGYRKQGELAELSGPLISRSTKVDELLQRNENGISRPARKSRLGRGKETFLLGSLTNEARILELESSSPSGVLR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0077 710 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Glsi12g0077 710 MobiDBLite consensus disorder prediction 419 437 - -
Glsi12g0077 710 FunFam probable serine/threonine-protein kinase At1g54610 103 198 - -
Glsi12g0077 710 PANTHER CELL DIVISION PROTEIN KINASE 114 404 - -
Glsi12g0077 710 CDD STKc_CDK9_like 116 400 - -
Glsi12g0077 710 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0077 710 FunFam probable serine/threonine-protein kinase At1g54610 199 439 - -
Glsi12g0077 710 Gene3D Transferase(Phosphotransferase) domain 1 199 439 - -
Glsi12g0077 710 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Glsi12g0077 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Glsi12g0077 710 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0077 710 MobiDBLite consensus disorder prediction 411 437 - -
Glsi12g0077 710 SUPERFAMILY Protein kinase-like (PK-like) 110 406 IPR011009 -
Glsi12g0077 710 MobiDBLite consensus disorder prediction 48 65 - -
Glsi12g0077 710 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0077 710 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0077 Glsi-ChrGlsi12 1943557 1953617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0077 108 440 Core Cell Cycle Gene Families AT5G10270 45.559 9.09e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi12g0077 Pkinase 2.1e-68 CL0016