Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0076 ATGGAAAACATGGAAAAAACAAACTTTTCTGAATTCTTGTCAGAGCTAATAGTTTTGGCTGATGATGTTGCTTCCTTCACTAAGAACTGTGAAATGGGAAGTAATGTTTTTTCTGAGTTCTCCATGTTGGTTGAGAGATTAGCACCAATCTTCAGTGATTTGAGAGACAAAAGCACAGTCATGGACAAGCCACCTATTAGACAATCGTTGAAATCTCTTGAGAATGAGCTTAGGCATGCTAAAGCTTTGACACAAAGCCCCAATTTAAAACAACCCATTACACAGATTGAGGACATAACTCATGATCTTGGTCGATCATTAGGCCTGCTGCTTGTGTCCGGCTTTGAGGTGTCCACAGATTTTAGAGAAAAGATTGGTGCATTGCAAAGACAGTTGATGAATGCAAAATTTGGTGGAAATATGAATCCAAGTTCAAATCCAAGATTAGAGATTGTTAATGATGTGAAGGTTGAAGGGGAAATTGAAGAGGAAATAGTCAAATTTATTATTGACGATGTTATATTGCAACTTAAGCATGGTAATGATGAAGAATTTGCTGTTGCACTCTTGAGACTAAAGGAGTTCATCAGGAGTGAAAAAGCCAACAGCAGTTTAATCAATGAGGAAGCAGTTGTTGCCATTCTTTTCAATCGACTAGGTTCAAGTAAGGCAGAGAGTAGGCTGACCATCATTCAGTTATTAAGAAGTATTGCGTTTGGCAATGATGAGAAAAAGGAGAAGATGGCAGATGTTGAATTTTTATCAGCTGTGGTGAAGTCTCTGTCACGGGATGCAGAAGAGAGGAGGGAAGCAGTGGGGCTTTTGCTAGATCTCTCTGACCTTCCTGCAGTTAGGCGGCGAATTGGAAGAATTCAGGGTTGTATTGTTATGCTGGTTGCTATCCTTAATGGAGATGATCCTGTTGCTTCTCATGGTTCTGCAAAGTTGTTGGATATATTGTCAAGTAATTCTCAAAATGCACTTCATATGGCGGAGGCTGGTTACTTTAAGCCATTAGTGCAGTATTTGAAGGAAGGATCTGACATGACCAAGATCCTCATGGCAACAGCACTTTCTCGATTGGAACTCACTGATCATAGCAAACTCTCTCTTGGAGAAGATGGGGCGATTGAGCCCCTAGCCAACATGTTTAATTTAGGGAAGCTCGAGTCAAAGTTATCAGCTCTAAATGCTCTGCAAAATTTGTCAAGCTTGACAGAAAATGCACAACGATTGGTCAGATCAGGAATTGTGAAATCTCTGCTTCAACTTCTTTTCTCTGTAACATCTGTACTCATGACTCTACGGGAGCCTGCATCAGCTATTCTTGCTAGAATTGCTAAGTCAGATCCCATACTTGTTAATCAAGATGTGGCTCAGCAGATGCTCTCACTTTTAAATCTTTCCAGCCCAATAATTCAGAGTCATCTATTAGAAGCGCTAGATAGCATTGCTGCCCATCCTGGTGCATCCAATGTTAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAGCTTCTTCTACCCTTTCTGATGGAAACTAACACTAGAATCCGGAGTAAGGCCTTGCATTTTCTGTACACTCTCTCCAAAGATCTAACAGAAGAGTTAACAGAACATCTTGATGATACCCATCTTTTTAATATTGTCAATATTATCTCATCATCAACATCAGACACTGAAAAAGTTGCTGCTGTTGGCTTACTGAGTAATCTTCCTGTTAGTGATAAAAGAGTGACAGATGCACTGAAGAGGGCACATTTGCTGCCCATTTTAATATCCATTATGTGTTCAAGCACAGGAAGTAATTCACCCATGACAAATAGTTTAGCGGAGAGTGTTGCAGGTGTTCTAATCCGGTTCACAAATTCCTCTGACAAGAAACTACAACTTTTCTCAGCAGAACATGGGGTAATTCCTTTGCTTGTAAAATTGCTCTCAACCGGTTCAACAGTCACAAAATTCAGAGCCGCAACCTCTCTGGCTCAATTATCGCAGAATTCTCTGTCTCTTAGGAGGTCTAGAAAATCGAGATGGTTGTGTGTTCCACCCTCTGTGGATGCGCATTGTGAAGTTCATGATGGTTATTGCTTTGTGAAAAGCACATTTTGTCTAGTCAAGGCGGGTGCTGTTCCTCCACTTATCCAAATATTGGAAGATAAAGAAAAGGAAGCTGTTGAAGCTGCTTTGAATGCCCTTTCAACTATCTTGCAAGATGAAATATGGGAAGGTGGTGTCAGTTGCATAGCCAAATTGTCAGGTGTTCAGGCTATTGTAAAAATTTTAGAAGTAGAAGATGTGAAGGTTCAAGAGAAAGCACTCTGGATGTTGGAGAGAATATTCAGGGTTGAAGAACAGAGAGTTAAATATGGAGAATCTGCCCAAGTGGTTCTTATTGATCTCGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTAGAGCTTTTGCAAGTTCAATCAAGTTACTTCTAG 2490 0.4024 MENMEKTNFSEFLSELIVLADDVASFTKNCEMGSNVFSEFSMLVERLAPIFSDLRDKSTVMDKPPIRQSLKSLENELRHAKALTQSPNLKQPITQIEDITHDLGRSLGLLLVSGFEVSTDFREKIGALQRQLMNAKFGGNMNPSSNPRLEIVNDVKVEGEIEEEIVKFIIDDVILQLKHGNDEEFAVALLRLKEFIRSEKANSSLINEEAVVAILFNRLGSSKAESRLTIIQLLRSIAFGNDEKKEKMADVEFLSAVVKSLSRDAEERREAVGLLLDLSDLPAVRRRIGRIQGCIVMLVAILNGDDPVASHGSAKLLDILSSNSQNALHMAEAGYFKPLVQYLKEGSDMTKILMATALSRLELTDHSKLSLGEDGAIEPLANMFNLGKLESKLSALNALQNLSSLTENAQRLVRSGIVKSLLQLLFSVTSVLMTLREPASAILARIAKSDPILVNQDVAQQMLSLLNLSSPIIQSHLLEALDSIAAHPGASNVRRKMKEKGALQLLLPFLMETNTRIRSKALHFLYTLSKDLTEELTEHLDDTHLFNIVNIISSSTSDTEKVAAVGLLSNLPVSDKRVTDALKRAHLLPILISIMCSSTGSNSPMTNSLAESVAGVLIRFTNSSDKKLQLFSAEHGVIPLLVKLLSTGSTVTKFRAATSLAQLSQNSLSLRRSRKSRWLCVPPSVDAHCEVHDGYCFVKSTFCLVKAGAVPPLIQILEDKEKEAVEAALNALSTILQDEIWEGGVSCIAKLSGVQAIVKILEVEDVKVQEKALWMLERIFRVEEQRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQVQSSYF 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0076 829 Gene3D - 169 303 IPR011989 -
Glsi12g0076 829 SUPERFAMILY ARM repeat 371 784 IPR016024 -
Glsi12g0076 829 Pfam Armadillo/beta-catenin-like repeat 703 734 IPR000225 GO:0005515
Glsi12g0076 829 Gene3D - 310 676 IPR011989 -
Glsi12g0076 829 SMART arm_5 625 665 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 241 280 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 405 448 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 364 404 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 741 781 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 490 530 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 323 363 IPR000225 GO:0005515
Glsi12g0076 829 SMART arm_5 697 737 IPR000225 GO:0005515
Glsi12g0076 829 SUPERFAMILY ARM repeat 171 425 IPR016024 -
Glsi12g0076 829 Gene3D - 688 826 IPR011989 -
Glsi12g0076 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 175 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0076 Glsi-ChrGlsi12 1885690 1888891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0076 180 829 U-box Gene Family AT1G20780 29.592 1.59e-53 197