Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0075 ATGGTTAATGACGATACGCCATGTTCCTACCGCAGCTACCATCGTCCAGATTTGAAAATGGATGGATCAACTGGCCGAGGTGGCAGCGGTGTGGACATGTTTTTACCAAATTATAAGTTGGGAAAAACACTCGGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGCCATAAAGTTGCTATTAAGATCCTTAATCGGCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATACGACTTTATGAGGTCATAGAAACTCCAACAGACATTTATGTTGTCATGGAGTATGTAAAATCTGGGGAGCTCTTTGATTACATAGTAGAAAAGGGCAGGCTGCAAGAAGATGAAGCCCGCAATTTTTTCCAGCAGATCATATCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGACCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGCAATGTCAAGATTGCTGATTTTGGTTTGAGCAACATCATGCGCGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCAAACTATGCTGCTCCAGAGGTTATATCTGGAAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCCTTTGATGATGAAAACATTCCAAACCTCTTTAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCACCTATCACCTGGTGCTAGAGATTTAATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGCCAACACCCATGGTTCCAAGCTCGTCTCCCCCGTTATTTAGCTGTGCCGCCACCAGATACAGTGCAACAAGCCAAAAAGATTGATGAGGAAATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAACTGGTTGAATCTCTCCGCAACCGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAATCGCTTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACGATGGATTCTGGTTTTAACCGTATTCATCCCAGTGAAGTTGCTGCTCCAGCTGTTGGTCACCGCTTTCCAGGGTATATGGATTACCAGGGAGTAGGATTGAGACCACAGTTCCCTGTTGAGAGGAAATGGGCCCTTGGGCTTCAGTCTCGTGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGCTGGAAAAAGATTGGACACTACAACATGAAGTGCAGGTGGATTGCTGGCACTCCTGGTCATCATGATGGAATGGTTGACAATACTTTGTATAGTAATCATTACTACAGAGATGATACCACCATTATTGAGAATGATGCTGTTTCTAAGTCAAACGCGGTCAAGTTTGAAGTTCAGCTTTACAAAACTCGGGAGGAGAAGTATCTTCTTGATCTTCAAAGGGTCCAGGGCCCACAATTCCTCTTTTTGGATCTTTGTGCTGCTTTCCTTGCGCAGCTTCGTGTCCTCTAA 1602 0.4295 MVNDDTPCSYRSYHRPDLKMDGSTGRGGSGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTVQQAKKIDEEILQEVVNMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGFNRIHPSEVAAPAVGHRFPGYMDYQGVGLRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWIAGTPGHHDGMVDNTLYSNHYYRDDTTIIENDAVSKSNAVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0075 533 SUPERFAMILY KA1-like 347 532 IPR028375 -
Glsi12g0075 533 ProSiteProfiles Protein kinase domain profile. 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0075 533 CDD AMPKA_C 408 530 - -
Glsi12g0075 533 FunFam Non-specific serine/threonine protein kinase 29 368 - -
Glsi12g0075 533 Gene3D Transferase(Phosphotransferase) domain 1 29 368 - -
Glsi12g0075 533 SUPERFAMILY Protein kinase-like (PK-like) 35 306 IPR011009 -
Glsi12g0075 533 SMART uba_6 313 350 IPR015940 -
Glsi12g0075 533 CDD STKc_AMPK_alpha 35 290 - -
Glsi12g0075 533 CDD UBA_SnRK1_plant 312 352 - -
Glsi12g0075 533 FunFam Non-specific serine/threonine protein kinase 414 531 - -
Glsi12g0075 533 SUPERFAMILY UBA-like 301 349 IPR009060 GO:0005515
Glsi12g0075 533 FunFam Non-specific serine/threonine protein kinase 30 117 - -
Glsi12g0075 533 PANTHER SERINE/THREONINE KINASE 37 355 - -
Glsi12g0075 533 Gene3D Kinase associated domain 1, KA1 414 531 - -
Glsi12g0075 533 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 311 351 IPR015940 -
Glsi12g0075 533 Pfam Protein kinase domain 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0075 533 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 484 532 IPR001772 -
Glsi12g0075 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Glsi12g0075 533 Pfam UBA/TS-N domain 312 348 IPR015940 -
Glsi12g0075 533 Pfam Kinase associated domain 1 490 532 IPR001772 -
Glsi12g0075 533 SMART serkin_6 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0075 533 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0075 Glsi-ChrGlsi12 1848555 1857786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0075 38 290 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 3.04e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Glsi12g0075 Pkinase 1e-80 CL0016