Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0073 ATGGCGAGGAAGAGAAAGGCTGTTGAAGAAATGGAAGAGAGAAATCCTATTGAGGGAACCATAGCCTGGGATGAGATGGTGAAGGAAGCTGCAGCACTAGGAGGGGTCCGAAGAGCCCGAAAGCGATTCGTTGGTGTGCGGCAAAGGCCATCAGGTCGATGGGTTGCTGAAATAAAGGACACGATTCAGAAGATAAGGGTGTGGTTGGGGACTTTTGATACAGCAGAAGAAGCGGCCAGAGCTTATGATGAGGCTGCTTGCCTGCTCCGTGGTGCCAACACTCGCACGAACTTCTGGCCGTGTTCTCAATCTTCAACTCCAGCTCTTCCCTCAAAGGTCACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAATAACTCTAGTACTTCTTCTTCCTCCTCCAGTTCTCTTGTCACCCACCAGCAAAAGCACGAAGCAGATGTATTTGGACAAGAACCAACAGCTTTCTCAGTTGACCAATTCACTGACTTCCTTAATGATCCTGAAGATTACAGCACAAGCTACCATGACTCCAGCAATATCAATGCACAATTTGATTACATTACTCGCAGTTTTGAGTCATGTTTAACTGAAAAGGATGACTGCAAGGGAAGAGAAGTGCATTTGGAAGAAAATCTCAGCAATGTCGCACAAACTACAAGTTCTGACTGCAATTCAGGAGGGGAAAGAGAGGAAGACGGTGAAGAAGAAAGTGCGGTTTTGGGTGTCCATGATTTCCAATTTCTGGACAGTGTTGTTCCTTCATGTTACTATTCTCCTTTTGAGATAGCTGAAGAGATCGAGGAGCATGTTGAGCCAGAGAACTATAATGACGAGCCTTCAATGCTCAGAGCTGCCATGAAGAGGATGAAATATGAGAGAAAGTTCTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAGTGCTTAAAGTTGAAACTGGGATCAGGAAACTTAAAGGGAAGAGGAATTTCTGATCAACTAACCAACCTCCAGTTGGCATGTAGCAAGAACAAAATTGAGGAGAATAAGGAAGAAAAAGAATATATGAGAGCAGTGGATAGGAAAGAGGAGGAAAATCAACAAACATCGATTGATATAGAGTCGCCTTCTTCATCATCCAGTATTGATGGTGAACTGTTGCTTTGGAATTCCCTGGATCTTCCTCCCATCTGCTATGTTAACTAA 1191 0.4433 MARKRKAVEEMEERNPIEGTIAWDEMVKEAAALGGVRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTPALPSKVTNLLLQRLKARNNNSSTSSSSSSSLVTHQQKHEADVFGQEPTAFSVDQFTDFLNDPEDYSTSYHDSSNINAQFDYITRSFESCLTEKDDCKGREVHLEENLSNVAQTTSSDCNSGGEREEDGEEESAVLGVHDFQFLDSVVPSCYYSPFEIAEEIEEHVEPENYNDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLGSGNLKGRGISDQLTNLQLACSKNKIEENKEEKEYMRAVDRKEEENQQTSIDIESPSSSSSIDGELLLWNSLDLPPICYVN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0073 396 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 Coils Coil 340 363 - -
Glsi12g0073 396 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Glsi12g0073 396 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Glsi12g0073 396 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 MobiDBLite consensus disorder prediction 124 143 - -
Glsi12g0073 396 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 298 - -
Glsi12g0073 396 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 MobiDBLite consensus disorder prediction 124 146 - -
Glsi12g0073 396 MobiDBLite consensus disorder prediction 356 376 - -
Glsi12g0073 396 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Glsi12g0073 396 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Glsi12g0073 396 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0073 Glsi-ChrGlsi12 1837207 1838397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0073 40 98 AP2-EREBP Transcription Factor Family AT5G19790 86.441 3.72e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g0073 AP2 7.6e-15 CL0081