Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0067 ATGGAGAACGTTTCCACACCTCGAAAGGAAGATGAGCAGTTTGAATTACCTCCGGGATTTCGATTCCATCCCACCGATGAAGAACTTATTACTCACTATCTATCTCAGAAGGTTCTTGACAGCTGCTTCTGTGCTAGAGCAATTGGCGAGGTCGATTTGAACAAGTGTGAGCCATGGGATTTGCCCTACAGAAAATACCCAACTGGTCTAAGGACAAACAGGGCTACCGATGCTGGCTACTGGAAAGCTACAGGCAAAGACAAGGAGATATTCAAAGCAAAGGCACTCATTGGAATGAAGAAAACTCTGGTTTTCTACCAGGGAAGAGCTCCTAAAGGTGAAAAGACAAACTGGGTCATGCATGAATACAGGCTAGAGGGTAAACCTTCCAACTATAATCTACCCAAAATTGCTAAGATTGAGTGGGTTATCTGCAGAGTCTTTCAAAAGAGTTCTGGTGAGAAGAAAATGCATATTCCAGGTTTAGTGAGGCTCAGCTCCTTTGGAAAGAAACCACCTGCTTCTCTCTTGCCTCCGTTGATGGATTCTTCACCATATAACAGCAAAACAAAAACCTGTCTTGGAGAGTTATCATCACACGTGACCTGCTTCTCCGATCCAAATCATAAGGAGGATCAAAAGACACAAGATGACATCGGTGATAACTTGGAAACTCCTGTCTTGGGCTCTTCATCTTGTTCAAACCCCTCTGGTATTTACCCTCCCTCATGGACTTTTCCCAAAGCAACCCCTACAGATTCTTACCAGTCCACTTCAATTGCACCCCAAATTGGGAATTCACAGTACCCGGGTGATTTTCTGATTCAAGAACAGTCCATGTCGAGGATGCTGATTGAAAACCATGGATCAAGTACAAAGCCGAATCTGAAAGCAGAGTTTTCTCAGGGAAGAAACTTCGATGCCGATATCTCCTCTGTGATATACAACAATGGGACGGTTCACAGATCATTTGAGAATCAAGAATATTCAACAGCTTCCGCCGGGCCTGTGGACATCGGTTGCCTCTGGAATTACTAG 1038 0.4432 MENVSTPRKEDEQFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEVDLNKCEPWDLPYRKYPTGLRTNRATDAGYWKATGKDKEIFKAKALIGMKKTLVFYQGRAPKGEKTNWVMHEYRLEGKPSNYNLPKIAKIEWVICRVFQKSSGEKKMHIPGLVRLSSFGKKPPASLLPPLMDSSPYNSKTKTCLGELSSHVTCFSDPNHKEDQKTQDDIGDNLETPVLGSSSCSNPSGIYPPSWTFPKATPTDSYQSTSIAPQIGNSQYPGDFLIQEQSMSRMLIENHGSSTKPNLKAEFSQGRNFDADISSVIYNNGTVHRSFENQEYSTASAGPVDIGCLWNY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0067 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Glsi12g0067 345 Pfam No apical meristem (NAM) protein 17 125 IPR003441 GO:0003677|GO:0006355
Glsi12g0067 345 Gene3D NAC domain 25 154 IPR036093 GO:0003677|GO:0006355
Glsi12g0067 345 ProSiteProfiles NAC domain profile. 16 150 IPR003441 GO:0003677|GO:0006355
Glsi12g0067 345 SUPERFAMILY NAC domain 13 150 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0067 Glsi-ChrGlsi12 1693514 1694818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0067 14 345 NAC Transcription Factor Family AT5G07680 51.003 5.20e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g0067 NAM 2.2e-29 No_clan