Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0066 ATGGGTCGATCGCCATGCTGTGACAAGGTGGGCTTAAAGAAAGGACCGTGGACTCCTGAGGAAGACCAGAAACTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGAGCCTTGCCAGCAAAAGCTGGACTTCAAAGATGTGGCAAGAGCTGCAGACTGAGGTGGACAAATTATCTTAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACAATCATTCAACTCCATGCTCTCTTAGGAAACAGGTGGTCGGCTATAGCCACGCACTTGCCAAAGAGAACAGATAATGAGATTAAGAACTACTGGAATACGCATCTTAAGAAAAGGTTAGCCAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAATGATGCCCTCCTCTCTCGTGACGGCCAATCCAAGAATGCCGCCAACCTTAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTAGTTAGGGAATCAAAACTGCATTCACATTTATTGCAGCAAGAGCTGGGCAGTTCTGGGTTTCCATCTCCATCTTCTGCGTCAACTTCAGCTCCAGTTCTGAATAAACCAGGGGCACCACCTTTAGCCTCACGGTCTCTAGATGTAATGAAGGCTTGGAATGATAGGTGGCTAAAATCTACTGAATGCAATGGCGGTATTGCCAATGGGATCAGTGGCGATCTTGAGTCGCCAACGTCTACCTTAACACTCTCTGAAAACGCACCACCTATTATGACTAGTGTAGCTGGAGAAAGCTCAATGCCTACTTCAGGTTCTTGTGAGGCAGAAATTGTGAATGAAGAAGGTGAACAAGAGTGGAAAGGTTATAAAAGATCGAACCATCAGCCAGAATACAAAGATGGTATAGAGAATTCAATGTCTAATTATATGTCTAGTCTGCATGAGTTGAAAATGTCCATTGAAGGCACATGGATCTCTGAACCTCTTAGGACTAGTGGTGCAAATGTCCCCGTTGGAGCTGTTATTGCTGAGGAGGGATTCACCAGTCTGTTACTTAATACAAACTCTGATGACCGGAGCTTGTCGGAGGGCGGGGGAGATGAGTCTAATAATTGGGATGGTACTGGCAGTGGGGGTGACTTCTGTGAAGATAACAAGAACTACTGGAATAGCATTCTTAATTTAATGAATTCTTCCCCCTCTCGTTCCCCCGTGTTGTAA 1209 0.4574 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSRDGQSKNAANLSHMAQWESARLEAEARLVRESKLHSHLLQQELGSSGFPSPSSASTSAPVLNKPGAPPLASRSLDVMKAWNDRWLKSTECNGGIANGISGDLESPTSTLTLSENAPPIMTSVAGESSMPTSGSCEAEIVNEEGEQEWKGYKRSNHQPEYKDGIENSMSNYMSSLHELKMSIEGTWISEPLRTSGANVPVGAVIAEEGFTSLLLNTNSDDRSLSEGGGDESNNWDGTGSGGDFCEDNKNYWNSILNLMNSSPSRSPVL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0066 402 CDD SANT 69 112 IPR001005 -
Glsi12g0066 402 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi12g0066 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Glsi12g0066 402 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi12g0066 402 CDD SANT 16 61 IPR001005 -
Glsi12g0066 402 FunFam MYB-related transcription factor 13 66 - -
Glsi12g0066 402 MobiDBLite consensus disorder prediction 178 195 - -
Glsi12g0066 402 MobiDBLite consensus disorder prediction 178 205 - -
Glsi12g0066 402 Gene3D - 13 66 - -
Glsi12g0066 402 Gene3D - 69 116 - -
Glsi12g0066 402 SMART sant 66 114 IPR001005 -
Glsi12g0066 402 SMART sant 13 63 IPR001005 -
Glsi12g0066 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi12g0066 402 MobiDBLite consensus disorder prediction 350 372 - -
Glsi12g0066 402 FunFam MYB transcription factor 69 116 - -
Glsi12g0066 402 MobiDBLite consensus disorder prediction 350 374 - -
Glsi12g0066 402 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi12g0066 402 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi12g0066 402 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi12g0066 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0066 Glsi-ChrGlsi12 1639054 1641126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0066 1 249 MYB Transcription Factor Family AT3G01140 71.084 1.49e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g0066 Myb_DNA-binding 1.5e-15 CL0123