Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0065 ATGGAGAGACCGTTGGGGCTAAGAAAAGGTACGTGGTGTAAACAAGAAGACGACCTCCTAAAGGCCTGCATTCAACGTTATGGAGAAGGAAAATGGCACCTAGTTCCTCAAAGAGCAGGGTTGAATAGATGCAGGAAAAGTTGTAGATTGAGGTGGATGAACTATCTAAAACCAGATATCAAGCGAGGAAACTTCACTGACGATGAAGTTGATATGATAATGAGGTTCCATAAACTCTTGGGAAACAGATGGTCGCTGATTGCTGCAAGGTTTCCTGGAAGAACATCTAATGATTTGAAAAATTACTGGAACACCTACATGCGCAAGAAACATTCCTCTCAAAAGGAGGAAAAGAATGAGAAACACGAGACAATTATGGAAACCCACGAAGTAATAAAGCCCCAACCTCTAACTTTCTCAAGAAATTCGGCATGGTTGAGAGGGAAATCTGTAATTGCAGTTAATAATGATAATATTAATAGTGCAAACCAGCACACTTCTAAACAGCCATGTCCAGTTTCCCCAAAACTGTCAGAGAACTCGAGGGAGTGGTGGGAGAATTTGCTAGATGACAAGGAAGGCGACGAAGGAAACAGCTCATGGTGTTTAGGTGAGGAAGGGGGAACCTTCTCCCTGACCCCTGTGATAAGGAACTCAGTGTACCATGCACTCTAG 675 0.4311 MERPLGLRKGTWCKQEDDLLKACIQRYGEGKWHLVPQRAGLNRCRKSCRLRWMNYLKPDIKRGNFTDDEVDMIMRFHKLLGNRWSLIAARFPGRTSNDLKNYWNTYMRKKHSSQKEEKNEKHETIMETHEVIKPQPLTFSRNSAWLRGKSVIAVNNDNINSANQHTSKQPCPVSPKLSENSREWWENLLDDKEGDEGNSSWCLGEEGGTFSLTPVIRNSVYHAL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0065 224 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Glsi12g0065 224 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Glsi12g0065 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Glsi12g0065 224 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Glsi12g0065 224 FunFam Myb transcription factor 9 61 - -
Glsi12g0065 224 Gene3D - 64 127 - -
Glsi12g0065 224 CDD SANT 64 107 IPR001005 -
Glsi12g0065 224 Gene3D - 9 61 - -
Glsi12g0065 224 CDD SANT 11 56 IPR001005 -
Glsi12g0065 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 165 - -
Glsi12g0065 224 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Glsi12g0065 224 SMART sant 61 109 IPR001005 -
Glsi12g0065 224 SMART sant 8 58 IPR001005 -
Glsi12g0065 224 ProSiteProfiles Myb-like domain profile. 7 56 IPR001005 -
Glsi12g0065 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0065 Glsi-ChrGlsi12 1572688 1573833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0065 2 140 MYB Transcription Factor Family AT1G66370 61.644 1.44e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g0065 Myb_DNA-binding 2.2e-13 CL0123