Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0045 ATGATCCCAAAGCATTGTTATGAAGAGAGGGCTTCCTCAGATGTCGCCGGCAAAGTGGTCGTAGTTGCAGTCAAAGCTTCGAAAGAAATTTCCAGGACGGCGCTAGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTATTGGTCGTCATTCCGGTTCTCACCTCAACTAGGAGGATATGGACACTTTCAAGATTTACCACTGATTGCACGTCCAGTCACTGGAGATCCCTTTTAGGAACTGCTTCAGATCAGAAGGAAATCATTGCAAATTCATGTTCTCAGTTGGTGGTTCAAATCCATGATTTTTATGATCCAGAAAAGATCAAGTTCAGAGTAAAGATTCTTTCTGGTTCTTTATGTGGAGCAGTGGCTGCTGAAGCCAAGAGAGTCCAATCAAGCTGGGTTATATTGGACAAAAAATTAAAACATGAAAAAAAATACTGCATGGAGGAGCTGCGTTGCAATATTGTGGTTATGAAGGGATCTCGGGCAGAGGTTCTTCGTTTGAATTTAAACAGTTCACCAAAGATGGAACTCGAGGAGGGTTCTCCATCGTCACCAGAGCTGAGTGCATATCCAAGAAACTTAAAAGGAAAGTTTGAGCATCGAGATATGATTAGAGGTCCCGCTGTTACTCCTGCAAGTAGTCCAGAACAGGGGTCACCATTAACTGCAACAGATGTTGGAACATCATCAATATCAAGCTCAGATACTGGGACTTCACCTTTTTTCCACTCTGACATATATGGGAGACGAAGGAGAGACTTTCCCTTTGTTCATGAAGAACTTCAAAATCTAGAGGAAAATGAGTCTGACTCAGATAGTGAAAAGCTGAGTTTATCATCGAAAAGTTCGTATTTCCAGCCATGGATTGCAGATGTAATGAGTACTGATATTGAAATCTCAAAACATAAAGACAGTATGCAAAAAACCAGTGATAGGGCTTTGGCTTCTGCCTATGAAACCTTGCTTCAGAAAGTCCTGATGTTGGATCTAGAACCTAGCATAGGAGTGCTTAATTGTAAAATTGATGTTAACTTAAGTAAAAGTGTTAGAGAAGCCATTTCGCTGGCAAGGAATGCACCTCCTGGCCCTCCTCCATTGTGCTCTATTTGTCAGCACAAGGCACCCATATTTGGGAATCCTCCACGGTGGTTTACATTTTCAGAACTGAAACTTGCCACAGGTGGATTTTCACAAGCAAATTTCTTGGCTGAAGGTGGGTTTGGTTCTGTACACCGTGGTGTCCTACCTGATGGGCAGGTCATTGCTGTCAAGCAGTATAAATTAGCCAGTACTCAAGGTGATAAAGAATTTTGCTCAGAAGTTGAGGTATTGAGCTGTGCACAGCATCGAAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGGTTGCTAGTTTATGAATATATCTGCAATGGGTCTCTAGATTCTCATCTCTATGGACGAAATCAGGATGTACTGGAATGGTCTGCACGGCAAAAAATTGCAGTTGGGGCTGCTCGGGGTTTGAGGTACCTCCATGAAGAATGTAGAGTGGGTTGTATCGTGCACCGTGATATGCGGCCTAACAATATCCTCATAACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCCAGATGGCAGCCAGATGGAGATATGGGTGTGGAAACCAGGGTGATAGGCACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGTCAGATCACTGAGAAAGCTGATGTGTATTCCTTTGGAGTGGTACTGCTGGAGCTTGTCACAGGATCAAAAGCTGTGGATATAAACCGGCCCAGAGGTCAGCAATGCCTCACTGAATGGGCACGCCCATTGCTTGAAAGAGATTCCATTCATGAACTGGTTGATCCAAGCTTGAAAAACTGCTATATCAATCAAGAGGTTCATCGCATGCTGCAATGTTGCTCATTGTGTATCCAGCAGGATCCTCATTTTAGGCCTCGAATGTCTCAGGTACTCCGGATGCTGGAAGGGGAAAAGGACCAGGGAATACGGGGCCATACGTGGTGCTTAGTTGGGAAAATTGTGCCAAATCACATCAGAAGAGACTTCATATCCTGTGTAAGGACGAAACTCAACCCTGGAAGACATTCTAACCAAGCACCACGAGCCAGCATCATGTCAAAGCTTCCTCTAGGGGGTGCATTCACGAAGGTATTTTCCATGAAGGAGTTGATGTCAAGAAACGCGAACTGTCATCATGGGCCCAATATGGGCATTAAGTTAGCTGGTAATTCTTATCTCCTGAGCGGGCCATTCTACTTTGAAGTAAAACGACATTGA 2334 0.4387 MIPKHCYEERASSDVAGKVVVVAVKASKEISRTALVWALTHVVQPGDCIKLLVVIPVLTSTRRIWTLSRFTTDCTSSHWRSLLGTASDQKEIIANSCSQLVVQIHDFYDPEKIKFRVKILSGSLCGAVAAEAKRVQSSWVILDKKLKHEKKYCMEELRCNIVVMKGSRAEVLRLNLNSSPKMELEEGSPSSPELSAYPRNLKGKFEHRDMIRGPAVTPASSPEQGSPLTATDVGTSSISSSDTGTSPFFHSDIYGRRRRDFPFVHEELQNLEENESDSDSEKLSLSSKSSYFQPWIADVMSTDIEISKHKDSMQKTSDRALASAYETLLQKVLMLDLEPSIGVLNCKIDVNLSKSVREAISLARNAPPGPPPLCSICQHKAPIFGNPPRWFTFSELKLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRNQDVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLLELVTGSKAVDINRPRGQQCLTEWARPLLERDSIHELVDPSLKNCYINQEVHRMLQCCSLCIQQDPHFRPRMSQVLRMLEGEKDQGIRGHTWCLVGKIVPNHIRRDFISCVRTKLNPGRHSNQAPRASIMSKLPLGGAFTKVFSMKELMSRNANCHHGPNMGIKLAGNSYLLSGPFYFEVKRH 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0045 777 MobiDBLite consensus disorder prediction 213 244 - -
Glsi12g0045 777 ProSiteProfiles Protein kinase domain profile. 403 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0045 777 Pfam Protein tyrosine and serine/threonine kinase 407 673 IPR001245 GO:0004672|GO:0006468
Glsi12g0045 777 PANTHER OS01G0750732 PROTEIN 297 677 - -
Glsi12g0045 777 SUPERFAMILY Protein kinase-like (PK-like) 383 674 IPR011009 -
Glsi12g0045 777 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
Glsi12g0045 777 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Glsi12g0045 777 MobiDBLite consensus disorder prediction 219 244 - -
Glsi12g0045 777 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Glsi12g0045 777 CDD STKc_IRAK 409 675 - -
Glsi12g0045 777 Gene3D Transferase(Phosphotransferase) domain 1 479 683 - -
Glsi12g0045 777 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0045 Glsi-ChrGlsi12 1275132 1282505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0045 383 680 Trihelix Transcription Factor Family AT1G70460 50.993 6.76e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Glsi12g0045 PK_Tyr_Ser-Thr 1.3e-42 CL0016