Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0044 ATGGCTAGAAAGTGCTCACATTGTGGAAACATAGGCCATAATTCTAGGACCTGCACATCTTTCAGAGGTGCTTTTGTAGGACTTCGCCTCTTCGGTGTGCAACTAGATATTTCCTCATCTTCTGCTCCGATGAAGAAAAGCTTTAGCATGGATTCTTTACCCTCATCATCATCTCCATCTTCCTCATTTTCTTCTTCAAAATTAACCATCGATGAAAATTCTGAGAGAACCTCCATTGGGTATCTATCTGACGGTCTCTTAGGTCGAGTAGAAGACAAGAGAAAAGGAGTTCCGTGGACAGAAGAGGAGCACCGAGCATTTCTTATTGGACTTGAGAAGCTGGGAAAGGGTGACTGGAGGGGTATCTCTAGAAACTATGTGACTACAAGAACCCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTTCGACTTGCAACGATTAATAAGAAGAAGCGACGTTCAAGTCTTTTTGATATGGTTGGTAGCAACAACTCCAATACACAAGGTCATCCAATTAGCAGCTCTAATTCCAAGCCAGGCAATTCAGTTTCTACTGACTTCAAACGGGAAGTTGAGAACGATAGTGTTTTGCAACCGTTAGGCCACGCCTCCTTTAAAACGGAAACCAAATCAGATAAGCAAGAAACTAATGATTATTCTCAGCAAGCTGCGACTGTCATGCTACATTCCCAGATGAAATCTCCAAATGTGGCAAAATCCAACCCCCCAAATGCAGCGCCTGATCTGGAGCTCTCTCTTGCAGCCCCTAAGATCCTGGAACAAAATAGATCATCCCCTGGTACCTTCCTTCATGGGCCAATTAGCGTAACATGA 840 0.4369 MARKCSHCGNIGHNSRTCTSFRGAFVGLRLFGVQLDISSSSAPMKKSFSMDSLPSSSSPSSSFSSSKLTIDENSERTSIGYLSDGLLGRVEDKRKGVPWTEEEHRAFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLATINKKKRRSSLFDMVGSNNSNTQGHPISSSNSKPGNSVSTDFKREVENDSVLQPLGHASFKTETKSDKQETNDYSQQAATVMLHSQMKSPNVAKSNPPNAAPDLELSLAAPKILEQNRSSPGTFLHGPISVT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0044 279 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Glsi12g0044 279 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Glsi12g0044 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Glsi12g0044 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 145 IPR006447 GO:0003677
Glsi12g0044 279 CDD SANT 98 143 IPR001005 -
Glsi12g0044 279 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Glsi12g0044 279 Gene3D - 97 150 - -
Glsi12g0044 279 PANTHER TRANSCRIPTION FACTOR KUA1 3 239 - -
Glsi12g0044 279 SMART sant 95 145 IPR001005 -
Glsi12g0044 279 FunFam transcription factor MYB1R1 97 148 - -
Glsi12g0044 279 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Glsi12g0044 279 MobiDBLite consensus disorder prediction 260 279 - -
Glsi12g0044 279 MobiDBLite consensus disorder prediction 160 186 - -
Glsi12g0044 279 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Glsi12g0044 279 MobiDBLite consensus disorder prediction 48 69 - -
Glsi12g0044 279 MobiDBLite consensus disorder prediction 234 279 - -
Glsi12g0044 279 MobiDBLite consensus disorder prediction 160 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0044 Glsi-ChrGlsi12 1207713 1209052 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi12g0044 Myb_DNA-binding 1.4e-10 CL0123