Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0029 ATGGCTCTAACTCTAGCAGTTCATTGCCCCAGTTCAACCCTTTCACCTCCACTCCCCTTTACTCTCTCTCTCGTTACACAAAAAATTTTGCCCCCTAAATGCATTTTATTTACGCCTCCTGCCCTCCGCCCCCTCCGCTTCCGCTTCAACAACCGGCGATCTTCCTCCACTGTGAAGGCCACCCTCTCCACCTCCGATACTTTGGCAACTGCGGCTAATGAAGGTGAGAAGAAGCTGCTGCTCCAAGTCGAAGATCTAAGGGCCAAGATTGCGGAGTCGGATGTAGAAATTCTTCATGGTGTTAACCTAGTCATCAACGAAGGAGAGGTTCATGCCATCATGGGAAAGAACGGTTCTGGAAAGAGCACATTTGCAAAGGTTCTCGTCGGTCATCCAGATTACGAAGTTACAGGAGGCAATGTTCTGTTCAAAGGGGAGAATCTGCTTGACATGGAACCCGAGGAAAGGTCACTTGCTGGCCTTTTTATGAGCTTCCAGTCCCCTATTGAAATCCCTGGTGTTTCTAATGATGAGTTTCTGGTTATGGCATATAATGCTCGAAGAAGAAAACTTGGATTACCTGAGCTTGGTCCACTTGAGTGCTTTTCTTTCTTAATGGAGAAACTCAAACTTGTAAACATGAAGCCAGACTTTCTCAATAGAAATGTAAACGAAGGTTTTAGTGGTGGGGAACGGAAGCGCAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATGTTGATGCATTGAGAGATGTGGCAAATGCAGTGAATCAGATTCTGACCCCAAAGAATTCTCTACTGATGATAACTCATTATCGACGAATTCTGGATCTTCTAAAGCCTACACACGTCCATATTATGGACAGGGGGAAAATTGCTAGGACAGGTGACATATCCATTGTACAATTTATTGAGACAGAGGGATACGAGACAGTGTCCGCTTAA 984 0.4522 MALTLAVHCPSSTLSPPLPFTLSLVTQKILPPKCILFTPPALRPLRFRFNNRRSSSTVKATLSTSDTLATAANEGEKKLLLQVEDLRAKIAESDVEILHGVNLVINEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGNVLFKGENLLDMEPEERSLAGLFMSFQSPIEIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSFLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRILDLLKPTHVHIMDRGKIARTGDISIVQFIETEGYETVSA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0029 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 311 IPR027417 -
Glsi12g0029 327 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 81 327 IPR003439 GO:0005524
Glsi12g0029 327 SMART AAA_5 107 304 IPR003593 GO:0016887
Glsi12g0029 327 Gene3D - 80 326 IPR027417 -
Glsi12g0029 327 Coils Coil 327 327 - -
Glsi12g0029 327 CDD ABC_FeS_Assembly 81 322 IPR010230 GO:0005524
Glsi12g0029 327 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 51 326 IPR010230 GO:0005524
Glsi12g0029 327 NCBIfam Fe-S cluster assembly ATPase SufC 81 324 IPR010230 GO:0005524
Glsi12g0029 327 ProSitePatterns ABC transporters family signature. 227 241 IPR017871 GO:0005524|GO:0016887
Glsi12g0029 327 Pfam ABC transporter 98 252 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0029 Glsi-ChrGlsi12 785806 809305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0029 94 312 Calmodulin-binding Proteins AT2G36910 24.464 8.57e-08 52.0