Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0023 ATGAAAACGCAGGCAGACGGTGCCGGTGCCGGTGCCGGTGCCGGAGCTGCCTCCGCCGCTGCCCTACCGAATCCCTGTGAAGGGGCAGAAAAGAAGAGCATAAATCCAGAGCTTTGGCAAGCTTGTGCGGGGCCGCTGGTGAACCTGCCGCCGGCCGGTACTTACGTGGTGTACTTCCCCCAAGGTCACAGTGAACAGGTTGCTGCATCTTTGAAGAAGGATGTGGATGCCCAGATCCCAAACTATCCAAATCTCCCCTCGAAGTTACTCTGTCTTCTTCACAATGTCACCTTGCATGCTGATCCAGAAACAGATGAAGTATATGCTCAGATGACACTTCAACCAGTGCCTTCTTTTGACAAGGATGCATTATTAAGATCGGATCTTGCTCTCAAGTCAAGTAAACCACAACCCGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACAAGCACTCATGGAGGTTTTTCTGTACCCCGCCGTGCAGCAGAGAAGATTTTCCCCACTCTTGATTACTCTATGCAACCACCTGCTCAAGAACTTGTGGCTAGGGATTTGCATGACAATGTTTGGACATTCCGTCATATATATCGTGGACAACCAAAGCGTCACTTACTTACAACTGGATGGAGTCTATTTGTCAGCGGAAAGAGGCTTTTTGCTGGAGATTCTGTATTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGACAACCCACCAATATATCATCCTCAGTGTTATCAAGTGATAGTATGCATATTGGAATTTTAGCGGCAGCAGCTCATGCTGCTGCAAACAATAGCCCCTTCATTGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTATATAGCCACCAAATATCAGCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCGGGGACAAGAAGGTTTATGGGTACAATAACAGGTATCAGTGATCTGGATCCTGTGAGATGGAAAAACTCACAGTGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGGGAAAGGCGAAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACTGCTCCATTTTTCATCTGTCCACCTCCATTTTTCAGATCCAAGCGGCCAAGACAACCTGGAATGTCTGATGATGATCCCTCTGATTTTGACAACCTTTTCAAGCGGACAATGCCTTGGCTTGGTGATGAAATATGCATGAAGGATCCACAAGCACTCCCTGGCCTGAGCTTAGTTCAATGGATGAACTTGCAGCAAAATCCTGCTCTGTCTAGCTCATTGCAGTCAAATTACATGCATTCCTTGTCTGGATCTGTTCTGCAAAATCTTCCTGGTGCAGATATTACCCGCCAGCTGGGATTTTCTTCACCACAAATTTCACAGCCAAACAATGTACCCTTCAATCCTCAGAGGCTACTTCAGACTGCACAACAACTTGATCATCTTCAGAAGATACCGTCCACAACTAGCCAATTGGGAATAGTCATGCAGCCACAGCAACAATTGGGTGATATCATTCAACAACCTAGGCAGAATTTGGCAAATCAAACCCTACCACAGAGTCAAGTTCAGAGCCAACTGCACCCCCAGAATCTTGTCCAAACTAACGATATTCTTCAACAGCAGCAATCATCCATTCAAAACCATCAACTCCATAGAAGCCTGTCTCAGAACCTGCCACTGCCGCAGCAGCAACAGACAATTATGGGTCAGAATCAACAGCAAAATCTGATTCAGTCCTCTATGCCTGATCATGTCAATCAACAATTACAGATGTCAGACAACCAGATTCAGCTTCAATTGTTACAAAAGCTTCAACAACAGCAACAAACACGCTTGGCACAGCAATCGGTATTGCAGCAGCCTACTCAACTTACTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATGCAGCTCAGAACTTCTCGAGGGCCCTAACACCAAGTCAAATGCTGGAGATTCCTCCTATACTACAGAACTCACTGCCTGAGGCTAATTCTATCCCACATCAGATGACAAAGATTAATGGCCAGACTAATATTCACTTCTCTCATCCGCCCCAGCAGCTAAAGCTTCAACATCAGCAACCTGGCATGTCTGAGATCTCTGGGCATGTGGGACTTCCCCCTACTTCTACAACCAACCAGCTCTCTACTGCTGGTAGTAGTAGTATATTGAATGGGGCAGCTGGAGTGGGGCAATCTGTTATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAATGCACTTCCACATTTGAATTCCCGGACCCATAGGAACACAATGATAGGGGATGACATGGCTCAGTCTACAGCCACAATCTTGAGTTCAAGTGCCTTAGAAACCATGTCATCAAATGCAAGCTTGGTGAAAGATTTACATCCAAAGTCTGAAGTTAAGCCTTCTCTAAACATTTCCAAAAATCAAAGTCTAGGGAACTTTGCCCCTCAGACATACTTAAATGGTGGAGCTGTGCAGACAGATTATTTGGATACATCTTCTTCGACTACTTCAGTTAGCCTTTCTCGAAATGACACTCATATGCATCAGAATAACAACCAGTTATCTTACAATCCACAGTCAATGTTCTTCAGAGACAATAGTCAAGATGGGGAAATTCAGGCAGATGCTCGGAGCAATGTTCCCTACAGCAATAACATTGATGGCCAATTGGGAATGCCACTGAATCCTGATTCTCTTTTAACCAAAGGAACCATGGGGCTGGCAAAGGATTTGTCAAATAACTTTTCTTCGGGAGGCATGCTTGGTAACTATGAAAATAACAGGGATGTGCAGCAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATCCCACAATAAATGATAGTAGTTTCTTAAATAGGGGTACATGGGCTCCGCCACCCCCACCGCCGCCGCCGCCGCCACCACCACCGCCACCACAGTTTCAACGGATGAGGACATATACCAAGGTATACAAACGCGGAGCTGTGGGAAGGTCCATAGACATAGCCCGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTGGCTCGTAGATTTGGCATAGAGGGACAGTTGGAGGATAGGCAAAGGATAGGCTGGAAACTTGTTTATGTAGATCACGAAAATGATGTTTTGCTAGTGGGGGATGACCCTTGGGGGGAGTTTGTGAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAGGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAACGGTTGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGGGGAAATACTTGA 3393 0.4556 MKTQADGAGAGAGAGAASAAALPNPCEGAEKKSINPELWQACAGPLVNLPPAGTYVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFIVFYNPRASPSEFVIPLAKYYKAVYSHQISAGMRFRMMFETEDSGTRRFMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMSDDDPSDFDNLFKRTMPWLGDEICMKDPQALPGLSLVQWMNLQQNPALSSSLQSNYMHSLSGSVLQNLPGADITRQLGFSSPQISQPNNVPFNPQRLLQTAQQLDHLQKIPSTTSQLGIVMQPQQQLGDIIQQPRQNLANQTLPQSQVQSQLHPQNLVQTNDILQQQQSSIQNHQLHRSLSQNLPLPQQQQTIMGQNQQQNLIQSSMPDHVNQQLQMSDNQIQLQLLQKLQQQQQTRLAQQSVLQQPTQLTQIQDQQRQLLDAAQNFSRALTPSQMLEIPPILQNSLPEANSIPHQMTKINGQTNIHFSHPPQQLKLQHQQPGMSEISGHVGLPPTSTTNQLSTAGSSSILNGAAGVGQSVITDDIPSCSTSPSTNNCANALPHLNSRTHRNTMIGDDMAQSTATILSSSALETMSSNASLVKDLHPKSEVKPSLNISKNQSLGNFAPQTYLNGGAVQTDYLDTSSSTTSVSLSRNDTHMHQNNNQLSYNPQSMFFRDNSQDGEIQADARSNVPYSNNIDGQLGMPLNPDSLLTKGTMGLAKDLSNNFSSGGMLGNYENNRDVQQELSSSMVSQTFGVPDMTFNSIDPTINDSSFLNRGTWAPPPPPPPPPPPPPPPQFQRMRTYTKVYKRGAVGRSIDIARYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWGEFVNCVRCIKILSPQEVQQMSLDGDFGNGCLPNQACSSSDGGNT 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0023 1130 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 633 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi12g0023 1130 FunFam Auxin response factor 305 376 - -
Glsi12g0023 1130 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Glsi12g0023 1130 MobiDBLite consensus disorder prediction 1 22 - -
Glsi12g0023 1130 Gene3D - 1013 1107 - -
Glsi12g0023 1130 SUPERFAMILY DNA-binding pseudobarrel domain 130 270 IPR015300 -
Glsi12g0023 1130 MobiDBLite consensus disorder prediction 989 1015 - -
Glsi12g0023 1130 MobiDBLite consensus disorder prediction 995 1015 - -
Glsi12g0023 1130 ProSiteProfiles PB1 domain profile. 1018 1102 IPR000270 GO:0005515
Glsi12g0023 1130 FunFam Auxin response factor 1013 1107 - -
Glsi12g0023 1130 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi12g0023 1130 SMART B3_2 141 243 IPR003340 GO:0003677
Glsi12g0023 1130 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
Glsi12g0023 1130 FunFam Auxin response factor 139 243 - -
Glsi12g0023 1130 SUPERFAMILY CAD & PB1 domains 1022 1096 - -
Glsi12g0023 1130 Gene3D - 305 376 - -
Glsi12g0023 1130 CDD B3_DNA 140 232 IPR003340 GO:0003677
Glsi12g0023 1130 Gene3D - 139 242 IPR015300 -
Glsi12g0023 1130 Pfam AUX/IAA family 1018 1103 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0023 Glsi-ChrGlsi12 654910 661952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0023 17 482 B3 DNA Binding Superfamily AT1G30330 60.331 1.68e-177 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi12g0023 B3 1.7e-19 CL0405