Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0016 ATGGCACTCAGAGGTTATTCGCCTTGGTCGCCAGCCATATCAGTCATTCTTCTTCTATATGTCGTTTCCAGCTCTTCGGGTGCTTCTGTATCAGAAATGCTCCTCAAGTTCAAGAGCTCCCTTGTGAACAACGATGCATTATCGACTTGGAATGAATCATCCTTTCCATGTACTGGTGACAATGCCATTTGGGTTGGTGTTCTCTGCGCAGATGGGAAAATTTGGGGCTTGAAACTTGAGGGAATGGGGCTCAGGGGGGTCATTGATGTGGACGCCCTCAAAGGGCTACCAGATCTCAGAACCATTAGCGTAATGGACAACGATTTCGATAGCGCATGGCCAGAAATAAACAAGCTACCTGGTCTGAAGTCGGTTTACCTTTCAAACAATAAATTTACAGGGGAAATTCCGGATCAAGCTTTCCAAGATATGCAATGGTTGAAGAAAGTTCATTTGGCAAACAATCAGTTTTCTGGTTCTATTCCAAATTCCTTGACACTTTTACCTAAGCTGAAGGAATTGAGGTTGGAGGGGAACAAATTCAAAGGCTCCATTCCCAATTTTCAACACATATTGAACTCATTTAATGTAGCTAACAATCAGTTGGTGGGCGAAATACCAGCCATCCTCAGTAAGATGTCGGCCTCATCCTTTACTGGTAATGAAGGCCTGTGCGGAAGCCCACTGGAATCGTGCCCGTCCTCCTCCAAGGGTCCCTCAATTATCAGTATTGTTGTGGTTGCCATAGTTGTAGGAATGGCCGTAATTGTGATTGGAGTAGTAATCTTCATCCTTCATAAAAGAAAAAACCGACCAACAGCTTCTGTGGAAAATCCACCTCCAAATTCTCAAAAGAAAGCAGGTGTCAAAGAAGGAGACGAAGGCAGTCATCACTCAGTAAGGTCACAAGGCTCCAGCACCACCAAAAAAGGAGAGAATAGTAACCTCAAGTTATCCTTTGTCAGAGATGACAGAGACAAGTTTGATTTGCAAGAATTGCTAAAAGCATCAGCTGAGGTATTGGGAAGTGGTTGTTTCAGTTCTTCCTATAAGGCTGCTTTGTTGAATGGTCCAGTAATTGTGGTGAAGAGGTTCAAGCAAATGAACAATGTAGGAAAGGATGAGTTTCAGGAGCACATGAGAAGGATAGGAAGGTTAACACATCCTAATTTGCTTCCTCTAGTGGCTTACTATTACCGAAAGGAGGAAAAGCTCTTGGTTACGGACTATGTTCAAAATGGCAGCTTGGCTGTTCGTCTTCATGGACACCAAGGTTTGGGCCAGCCAAGCCTTGATTGGCCTACCAGGTTGAAGATCGTGAAAGGCATATCAAAAGGCCTTGAATATCTCTACAAGGAGATGCCAAGCCTGATTGCACCCCATGGACACCTTAAATCCTCAAATGTTCTTCTGGGTGAATCTTTCGAGCCCCTCCTGAATGACTATGGTTTAGTCCCAGTGATTAACCAGGAGCTTGCTCAGGATACCATGGTGATCTACAAGTCTCCTGAATATCTGCAACATGGGAGGGTTACAAAGAAGACTGATGTTTGGAGTCTTGGAATACTGATTCTGGAGGTTTTAACTGGCAAGTTCCCTGCTAGCTTTCTGCAACAAGGCAAAGGAAGCGAGGTGGGTTTAGCGAATTGGGTTCATTCAGTTGTCCCAGAAGAGTGGACCAGTGAGGTGTTTGATAAAGAAATGGGTGAAACCATGAACAGCGAAGGGGAGATGGTCAAGCTATTGAAGATTGCATTGGGTTGTTGTGAAGGAGATGTGGACAAGAGATGGGATTTGAAAGAAGCTGTTGAGAAAATTCAAGAGGTGAAGGAGAAGAGCGACGAACAGGATATCTAG 1857 0.4437 MALRGYSPWSPAISVILLLYVVSSSSGASVSEMLLKFKSSLVNNDALSTWNESSFPCTGDNAIWVGVLCADGKIWGLKLEGMGLRGVIDVDALKGLPDLRTISVMDNDFDSAWPEINKLPGLKSVYLSNNKFTGEIPDQAFQDMQWLKKVHLANNQFSGSIPNSLTLLPKLKELRLEGNKFKGSIPNFQHILNSFNVANNQLVGEIPAILSKMSASSFTGNEGLCGSPLESCPSSSKGPSIISIVVVAIVVGMAVIVIGVVIFILHKRKNRPTASVENPPPNSQKKAGVKEGDEGSHHSVRSQGSSTTKKGENSNLKLSFVRDDRDKFDLQELLKASAEVLGSGCFSSSYKAALLNGPVIVVKRFKQMNNVGKDEFQEHMRRIGRLTHPNLLPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQGLGQPSLDWPTRLKIVKGISKGLEYLYKEMPSLIAPHGHLKSSNVLLGESFEPLLNDYGLVPVINQELAQDTMVIYKSPEYLQHGRVTKKTDVWSLGILILEVLTGKFPASFLQQGKGSEVGLANWVHSVVPEEWTSEVFDKEMGETMNSEGEMVKLLKIALGCCEGDVDKRWDLKEAVEKIQEVKEKSDEQDI 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0016 618 MobiDBLite consensus disorder prediction 299 313 - -
Glsi12g0016 618 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Glsi12g0016 618 Coils Coil 599 618 - -
Glsi12g0016 618 SUPERFAMILY Protein kinase-like (PK-like) 339 607 IPR011009 -
Glsi12g0016 618 Gene3D Phosphorylase Kinase; domain 1 300 410 - -
Glsi12g0016 618 FunFam Pollen receptor-like kinase 1 411 618 - -
Glsi12g0016 618 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0016 618 Pfam Protein kinase domain 339 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0016 618 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Glsi12g0016 618 FunFam pollen receptor-like kinase 1 303 410 - -
Glsi12g0016 618 Gene3D Ribonuclease Inhibitor 191 232 IPR032675 -
Glsi12g0016 618 Pfam Leucine rich repeat 120 181 IPR001611 GO:0005515
Glsi12g0016 618 SUPERFAMILY L domain-like 41 214 - -
Glsi12g0016 618 MobiDBLite consensus disorder prediction 272 313 - -
Glsi12g0016 618 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 615 IPR046959 -
Glsi12g0016 618 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0016 Glsi-ChrGlsi12 431289 435073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0016 15 617 Receptor kinase-like Gene Family AT5G35390 55.079 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi12g0016 Pkinase 7.7e-28 CL0016