LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g0010	ATGAACAGATCACCGTTCACAAGAGGTGGCAGAGCAAGCTACAAAACATATGAGTCCTCAATTACCGATTCTGATATATCATTTGTGAGCAGTGGAAGGCCAAGCATTGATAGGATCTTTCCTTCAACATATGATGATCTGGAACCTGGAATGATACCTCGGCTTTCGAACAGCTCAGATTTTGATGGCAGAAGCTTTGGGTCATCTTTCTCAGGAACTAAATCAATTGATATGAACTCATCTCACGGTGACTTCTCATTCAGCTCGCAAGACAGTGGGATATCATCATCAAGATTCTCCCAGATGGACGAAGTGGAAGCTGAGATGAGGAGACTGAAACTAGAACTGAAGCAAACAATGGAGATGTATAGCTCAGCTTGCAAGGAAGCTCTTACAGCAAGGGAGAAGGCAACGGAACTTCAGCGTTGGAAACTGGAAGAGCAACAAAGGCTAGAAGAGGCAGCAGAGATGGAGAAAGCAAAGTGCAGAGCTGCCATTGAGGCAGCAGAAGCATCTAAAAAAATTGTGGAACTGGAAGCACAAAAAAGATTGATTGCAGAAATGAAAGCCCTGAAAGAAACCGAGCTGAAAAAGAAGACACTAGATAGTTTTCCACAAGGTAGTGCCAGGTACAGAAGATACACTATTGAGGAAATTGAAGAAGCAACAAAACACTTTTCAGATTTGCTCAAGATCGGGGAAGGAGGGTATGGGCCAGTATATAGGTGTGAACTAGATCTCACACCGGTTGCAGTAAAAGTTTTGAGGCCAGATGCAGCTCAAGGAAGGTCACAGTTCCAGCAGGAGGTTGAAGTGTTAAGTTGTATACGGCATCCAAACATGGTTCTCCTCCTTGGAGCATGCCCAGAGTATGGCTGTCTAGTCTATGAGTACATGGCAAATGGAAGTTTGGATGACTGTCTCTTTAGGAGAGGAAACTCACCACCTCTTCCCTGGCAGTTAAGATTCCGAATTTCTGCAGAGATTGCCACTGGCCTCCTTTTCCTTCATCAGACAAAACCAGAACCACTTGTTCACCGTGACTTGAAACCTGGCAATATTTTACTTGATCGTAACTTTGTCAGCAAGATTAGTGATGTGGGATTGGCCAGACTTGTCCCTCCTTCTGTTGCAGACAGTGTAACTCAGTATCGCATGACATCAACTGCTGGAACTTTCTGTTATATTGACCCAGAGTACCAGCAAACTGGCATGCTTGGAATTAAATCTGATATTTACTCACTGGGGATCATGCTTCTACAAATAATAACAGCAAAGCCACCAATGGGTTTGACTCATCATGTTGGACGAGCTATAGAGAAGGGGACTTTCATTGAGATGCTTGACCCAGCTGTTGAAGACTGGCCAGTGGAGGAGGCCTTACATTTTGCCAAGCTTGCACTGCAGTGTGCAGAAATGAGGAAAAAAGATAGACCTGACCTTAAAAATGTCATATTACCTCATCTCAATAAATTGAGAGCCTTTGCTGAAGATAACATGCCAATCATGATGTTTGGACGAGGTACAGGATTCACTCCAAGAAGTAGCAATGTTTCCACAACTTCCACAATTCAAGATATTTTGAGTGACTCCCAGTCACTATCTGGAATCTCTGGATATGAAAGTCGCTCAAGCACATCATCATTGGGGAGACTATGA	1659	0.4364	MNRSPFTRGGRASYKTYESSITDSDISFVSSGRPSIDRIFPSTYDDLEPGMIPRLSNSSDFDGRSFGSSFSGTKSIDMNSSHGDFSFSSQDSGISSSRFSQMDEVEAEMRRLKLELKQTMEMYSSACKEALTAREKATELQRWKLEEQQRLEEAAEMEKAKCRAAIEAAEASKKIVELEAQKRLIAEMKALKETELKKKTLDSFPQGSARYRRYTIEEIEEATKHFSDLLKIGEGGYGPVYRCELDLTPVAVKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGNSPPLPWQLRFRISAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKPPMGLTHHVGRAIEKGTFIEMLDPAVEDWPVEEALHFAKLALQCAEMRKKDRPDLKNVILPHLNKLRAFAEDNMPIMMFGRGTGFTPRSSNVSTTSTIQDILSDSQSLSGISGYESRSSTSSLGRL	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g0010	552	Gene3D	Transferase(Phosphotransferase) domain 1	299	502	-	-
	Glsi12g0010	552	Coils	Coil	102	122	-	-
	Glsi12g0010	552	SUPERFAMILY	Protein kinase-like (PK-like)	205	485	IPR011009	-
	Glsi12g0010	552	Coils	Coil	145	188	-	-
	Glsi12g0010	552	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	344	356	IPR008271	GO:0004672\|GO:0006468
	Glsi12g0010	552	FunFam	U-box domain-containing protein 51	299	499	-	-
	Glsi12g0010	552	SMART	serkin_6	226	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0010	552	PANTHER	OS02G0152300 PROTEIN	43	516	-	-
	Glsi12g0010	552	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	198	298	-	-
	Glsi12g0010	552	Gene3D	Phosphorylase Kinase; domain 1	185	298	-	-
	Glsi12g0010	552	Pfam	Protein kinase domain	228	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0010	552	ProSiteProfiles	Protein kinase domain profile.	226	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g0010	Glsi-ChrGlsi12	222786	225147	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g0010	16	532	Receptor kinase-like Gene Family	AT5G35380	65.974	0.0	641

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Glsi12g0010		Pkinase	1.9e-38	CL0016