Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3402 ATGGAGAAGCACAGATCATCTGCTAAGGATGATCATAATGCTGGCAGTGATCAACCTGGTTCTGTTCAGATATTTAAACTGCCAGTTAGTCAAGATATAGGATTTCTGAGCAGTAGAAGTGAGTATGATGCCACAAAAGCAGTGACTCTGGATGGAGGCTTGGCAACCACTCCCCCCTCTTCTGAAAGCCACGGGGAATCTATTGACAAGTGGATGGCATTTACTAGGGAATCTAAGTTGACCAGTTCTGGCAACTCGGCAAATATGGATCATTTTGGGGCTAACAATGGAAGGAAAGATAAGGACACAAGGGACCATCTAAATAAGCAGTCATCTTTTGATCATCAAATTTTAAACGAAGCAAGCATTGCTGAGAGAACTGCTGAGTGGGGGCTTGTGATGAATTCGGCTAGTCTTAAAGCAATAGGAGGAGTGACTACCAAGTCCTCTTTCGATGGTGACAGAAGCAAAAACCCATCAGATAGATTTGTTGCGGCAGCATCAACAAGGACGTCTGAGGAATCAAATTATGGATCAGAGTCATCATCAGGGGCATTCCCAAGGGTATCACAAGAGTTGAAGGAAGCATTGGCGACTCTACAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGATTGCCCAATTATGTATGCAAGTAGCGGCTTTTTCAGCATGACTGGTTATTCTTCAAAGGAGGTTATTGGAAGGAATTGCCGGTTTCTTCAGGGCCCTGAGACTGACCAGAGTGAGGTGGCCAAAATTCGAGATGCAGTTAGAAATGGGAAAAGCTATTGTGGCAGGCTTTTAAACTACAAGAAAGATGGAACCCCATTCTGGAATCTTCTCACTGTCACTCCCATCAAAGATGGCCGGGGCAATGTCATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAATACACAGAAGGTGTGAATGAAAGGGCATTACGGCCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAGAAGGAGAGAGCTTTGGGTTCTATCACAGAGGTTGTTCAAACTGTCAAGGACCCAAAATCTATTACTCGGGCTATGAGTCATGATACTGCCAATAAGCATGAAGAGCAAGAGAAAATCAGTTTTGATTTTGTTTTACCGAAGTCTGTTGAAATTGAGAGTACTAGTTGGCCAAGTAGACAATCTCCTCCGGCAGACTTGCAAGGTGATATATCACGTGTGAGTTCATGTCATGATAGAAGCAAAAATTCAAGAAAGTCAGGGCGCATTTCTTTTATAGGTTTTAAAGGGAGATCTCTGAGCTCTGCAGGGAGGCATGAGGAGAAGCCCATTGTTGAACCGGAGGTTTTGATGACTAAGGACATAAAATGCTCTGGCAGTTGGGAGCGTGCTCAAAGAGAGAGAGATATACGGCAGGGAATTGATCTAGCAACCACATTGGAGCGTATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAATATACACGAGAAGAAATTTTGGGAAGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGATCAATCAACTGTCTCCAAGATTAGAGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACCAAGAGTGGAAAGAAGTTCTGGAATTTGTTCCACTTGCAGCCTATGCGTGATCAAAAGGGTGAACTTCAATACTTTATAGGCGTCCAATTAGATGGAAGTGATCATGTAGAACCTTTAAGAAACCGTCTATCTGAGAAAACAGAGCAACAAAGTGCGAAGTTGGTCAAAGCAACTGCAGAAAATGTTGATGGAGCTGTCCGAGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAGCCAGTATTTCCTAGACCTCACAAAAAGGAAAGTCCTTCTTGGGTAGCAATACAAAAGTTAACTGCATGTGGAGAAAAAATTGGCCTGCATCATTTTAAGCCAATCAGACCACTGGGTTGTGGAGATACTGGCAGTGTTCATCTTGTGGAACTTCAAGGTGCAGGTGAACTATATGCAATGAAGGCAATGGAAAAATCAGTCATGCTAACTCGTAATAAGGTCCACCGAGCATGCATTGAGAGAGAAATTATATCACTACTGGACCATCCTTTTCTTCCCACACTATACACTTCATTTCAGACTTCTACACACGTGTGTTTGATAACAGACTTCTGCCCTGGGGGAGAACTGTTTGCATTGCTTGATAAGCAACCCATGAAAATTTTCAAGGAGGAATCAGCAAGATTCTATGCAGCAGAGGTTGTCATTGGCTTGGAATACCTCCACTGTTTAGGTATAATTTATCGAGATCTAAAGCCTGAAAATATTCTACTTCAAAAGGAGGGCCATGTTGTATTAACTGATTTTGATTTATCTTTCACGGCTTCATGTAAACCCCAGATTGTGAAGCATCCGCCACCTAACCGTAGAAGATCTCGAACTCAACCACCACCAACATTTGTTGCAGAGCCTGTTACACAATCTAATTCATTTGTTGGAACTGAAGAATACATAGCTCCTGAAATTATAACAGGAGCTGGGCATACGAGTGCTATAGATTGGTGGGCTCTTGGTATCTTGTTGTATGAAATGCTCTATGGCCGCACGCCATTCAGGGGAAAGAATAGACAGAAGACATTTGCCAACATCTTGCACAAAGATCTAACCTTTCCCAGCAGCATCCCGGTAAGTCTTGCGGCCAGGCAGTTGATTAATGCGTTGTTGCAAAGAGACCCAGCCAGTCGTTTAGGCTCATGTACTGGAGCCAATGAAATCAAACAACATCCTTTCTTCCGTGGAATTAATTGGCCTTTAATCCGTTGCATGAGTCCACCGCCTCTGGATGTTCCTCTTCAATTGATAGGGAAAGATCCAATGGCCAAAGATGTGAAATGGGAAGATGATGGGGTTCTTGTTCGCTCGATAGATATGGATATTTTCTGA 3024 0.4269 MEKHRSSAKDDHNAGSDQPGSVQIFKLPVSQDIGFLSSRSEYDATKAVTLDGGLATTPPSSESHGESIDKWMAFTRESKLTSSGNSANMDHFGANNGRKDKDTRDHLNKQSSFDHQILNEASIAERTAEWGLVMNSASLKAIGGVTTKSSFDGDRSKNPSDRFVAAASTRTSEESNYGSESSSGAFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDQSEVAKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDGRGNVIKFIGMQVEVSKYTEGVNERALRPNGLPKSLIRYDARQKERALGSITEVVQTVKDPKSITRAMSHDTANKHEEQEKISFDFVLPKSVEIESTSWPSRQSPPADLQGDISRVSSCHDRSKNSRKSGRISFIGFKGRSLSSAGRHEEKPIVEPEVLMTKDIKCSGSWERAQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQSTVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEKTEQQSAKLVKATAENVDGAVRELPDANLRPEDLWAIHSQPVFPRPHKKESPSWVAIQKLTACGEKIGLHHFKPIRPLGCGDTGSVHLVELQGAGELYAMKAMEKSVMLTRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKEGHVVLTDFDLSFTASCKPQIVKHPPPNRRRSRTQPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLAARQLINALLQRDPASRLGSCTGANEIKQHPFFRGINWPLIRCMSPPPLDVPLQLIGKDPMAKDVKWEDDGVLVRSIDMDIF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3402 1007 ProSiteProfiles PAC domain profile. 545 599 IPR000700 -
Glsi11g3402 1007 FunFam LOV domain-containing protein 460 624 - -
Glsi11g3402 1007 CDD STKc_phototropin_like 670 981 - -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 385 417 - -
Glsi11g3402 1007 Pfam Protein kinase domain 674 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3402 1007 PANTHER FLIPPASE KINASE 1-RELATED 158 974 - -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 147 185 - -
Glsi11g3402 1007 ProSiteProfiles PAS repeat profile. 471 544 IPR000014 -
Glsi11g3402 1007 Gene3D Transferase(Phosphotransferase) domain 1 756 967 - -
Glsi11g3402 1007 FunFam Putative LOV domain-containing protein 203 359 - -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 1 23 - -
Glsi11g3402 1007 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524
Glsi11g3402 1007 SMART pas_2 473 542 IPR000014 -
Glsi11g3402 1007 SMART pas_2 191 260 IPR000014 -
Glsi11g3402 1007 FunFam LOV domain-containing protein 671 755 - -
Glsi11g3402 1007 SUPERFAMILY Protein kinase-like (PK-like) 650 985 IPR011009 -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 81 106 - -
Glsi11g3402 1007 Gene3D Phosphorylase Kinase; domain 1 671 755 - -
Glsi11g3402 1007 Pfam PAS domain 210 306 IPR000014 -
Glsi11g3402 1007 Pfam PAS domain 494 586 IPR000014 -
Glsi11g3402 1007 FunFam Putative LOV domain-containing protein 756 970 - -
Glsi11g3402 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 490 586 IPR035965 -
Glsi11g3402 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 210 302 IPR035965 -
Glsi11g3402 1007 SMART pac_2 266 308 IPR001610 -
Glsi11g3402 1007 SMART pac_2 548 590 IPR001610 -
Glsi11g3402 1007 CDD PAS 216 305 IPR000014 -
Glsi11g3402 1007 ProSiteProfiles PAC domain profile. 263 317 IPR000700 -
Glsi11g3402 1007 Gene3D PAS domain 460 624 - -
Glsi11g3402 1007 Gene3D PAS domain 203 374 - -
Glsi11g3402 1007 Coils Coil 595 615 - -
Glsi11g3402 1007 ProSiteProfiles Protein kinase domain profile. 672 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3402 1007 NCBIfam PAS domain S-box protein 497 589 IPR000014 -
Glsi11g3402 1007 NCBIfam PAS domain S-box protein 216 307 IPR000014 -
Glsi11g3402 1007 ProSiteProfiles PAS repeat profile. 189 262 IPR000014 -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 385 401 - -
Glsi11g3402 1007 SMART serkin_6 672 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3402 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Glsi11g3402 1007 CDD PAS 494 586 IPR000014 -
Glsi11g3402 1007 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3402 Glsi-ChrGlsi11 55728891 55849705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3402 119 1006 AGC Kinase Gene Family AT5G58140 74.749 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi11g3402 Pkinase 1.3e-61 CL0016